Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f07
(762 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc... 30 0.31
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.2
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 2.9
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 27 3.9
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ... 27 3.9
SPAC16C9.06c |upf1||ATP-dependent RNA helicase Upf1|Schizosaccha... 26 5.1
SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces... 26 6.7
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 8.9
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.9
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 8.9
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 25 8.9
>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 573
Score = 30.3 bits (65), Expect = 0.31
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = -2
Query: 590 VEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKN 411
++ P +L+H S+ L Q F N + KN+ VSK+ ++ I +
Sbjct: 115 IQSFPTRLYHICRNSIKSILQFQ----NFSNIFAKKNLFPKVSKSDVLLFPRDAFISQAS 170
Query: 410 QLQHIYNQYKGSQSHTQQNVQEH 342
L I ++Y+G+ +Q EH
Sbjct: 171 LLSLIRHEYRGNAKRLRQLRDEH 193
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.5 bits (58), Expect = 2.2
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = -3
Query: 130 VGTAYKIWYIRLTQPRTALVITMVIRG 50
+G + + WY + +PRT+L +T ++G
Sbjct: 1339 LGASAQSWYHEMPKPRTSLKLTETVKG 1365
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.1 bits (57), Expect = 2.9
Identities = 23/110 (20%), Positives = 46/110 (41%)
Frame = -2
Query: 569 LFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYN 390
+F + P + +P K ++ S + S+V K S + + PSK+
Sbjct: 90 MFEESSKQSPPSKSPTKNPSKKSSNNSSRRSSSSVGKLSNVSNMQSS--PSKDPFV---- 143
Query: 389 QYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRN 240
SQ + ++++ SEG L++ Q++ ++ EK+ D N
Sbjct: 144 ----SQDYEKESISSSQFSKKYSEGSLKSQQSNTRSNSVHEKQNTDHASN 189
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/70 (20%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
Frame = -2
Query: 347 EHLNVTSASEGRLRTAQTDVHHQALVEKEGGDVLRNNPLQP--KRLEATFEQGGDASINK 174
+H+ + +R + + H+Q++++ G V N+P+ P +L+ + + + K
Sbjct: 163 KHIIILQNKVDLIRESAAEEHYQSILKFIKGTVAENSPIVPISAQLKYNIDAILEYIVKK 222
Query: 173 LGVPEKSETT 144
+ +P + TT
Sbjct: 223 IPIPVRDFTT 232
>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1364
Score = 26.6 bits (56), Expect = 3.9
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 2/80 (2%)
Frame = -2
Query: 557 PAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKG 378
P SLP+ ++ QPT K S ++ S +SKT + I N+++H+
Sbjct: 712 PLSSLPEEVSRQPTDDK-GEQVSNADVDSGLSKTERL------TIQQTNEIKHVPTNTTS 764
Query: 377 SQSHTQQ--NVQEHLNVTSA 324
S QQ N E +T+A
Sbjct: 765 SVKLPQQPSNEDEKERITTA 784
>SPAC16C9.06c |upf1||ATP-dependent RNA helicase
Upf1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 925
Score = 26.2 bits (55), Expect = 5.1
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 405 QLILAGNFPYRLVTNYR 455
+LI+ GN P+RLV YR
Sbjct: 615 RLIILGNSPFRLVVQYR 631
>SPAC6B12.16 |meu26||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.7
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = +3
Query: 516 RWLRC*RLRKTRGRAVEEFRWKHFHR 593
+W+RC + + E F W+H HR
Sbjct: 310 KWIRCQGRKDVSVKIPEIFWWRHAHR 335
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 25.4 bits (53), Expect = 8.9
Identities = 21/97 (21%), Positives = 40/97 (41%)
Frame = -2
Query: 650 FXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKS 471
+ + + S YNT P + P +SP+ SLP + + SY N++
Sbjct: 193 YMVPANSRGSPANYNTPYYPTAIPPPIEEYSPSVSLPTSPVAEE---------SYNNVQR 243
Query: 470 TVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQ 360
+ + + KS+ K PS+ + Y+ + +Q
Sbjct: 244 SSTVRNNTTQKSVLKKPSRKMSPAYTSSYRQNSPSSQ 280
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.4 bits (53), Expect = 8.9
Identities = 28/135 (20%), Positives = 55/135 (40%), Gaps = 2/135 (1%)
Frame = -2
Query: 626 QSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSII 447
Q+H++ T QP ++ SP PQ L+P+P G K+ ++ T +T +
Sbjct: 375 QTHKK--TSSQPSDLSSFAQLLSP----PQVLSPKPNGGGHKSFRHSHSLSETSQQTLVP 428
Query: 446 GHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRL--RTAQTDVHHQAL 273
S G+ H + + + ++E L +A +L R + + +
Sbjct: 429 SLGSNGEYHLPTN-DHSSTPAQSERDSDVEELREQLENLTALTKKLSERLSSSTFDNSKF 487
Query: 272 VEKEGGDVLRNNPLQ 228
+ E D +R+ L+
Sbjct: 488 IRTEDKDTVRSAKLE 502
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 8.9
Identities = 13/50 (26%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Frame = -2
Query: 722 LNENANVLKQNKXGIQQEN--IKEPIFXIDTSKHQSHREYNTLGQPVEML 579
+ EN N L N G+ + N ++ P + T H +E+N L + + +
Sbjct: 18 VRENENELHINNSGMSELNKKLQLPNVELSTLSHTQEQEFNELNKLIRKI 67
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.9
Identities = 27/147 (18%), Positives = 60/147 (40%), Gaps = 9/147 (6%)
Frame = -2
Query: 731 NVQLNENANVLKQNKXGIQQENIKEPIFXIDTSKHQSHREY------NTLGQPVEMLPAK 570
NV+ N N K ++ N+K+ + + + + E+ + + +++ +
Sbjct: 199 NVEANPNTGFSSARKRSLRSSNLKKKFVPLSSPEESNESEFIDDDESDEVASIIDIKEDE 258
Query: 569 LFHSPAPSLPQTLAPQPTTGKFKND--CSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHI 396
F S +P+ AP +T + SY++ + VS + S + +K+ H
Sbjct: 259 TFDSKV-EIPEA-APSSSTESDEESIPLSYQSKRRRVSARASSSASSSSRTQAKSIPSHE 316
Query: 395 YNQYKGSQSHTQ-QNVQEHLNVTSASE 318
Y+ + H + ++V E L + E
Sbjct: 317 RTHYRLIRQHPELEHVWEKLEEEAPRE 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,561
Number of Sequences: 5004
Number of extensions: 64637
Number of successful extensions: 213
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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