Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f07
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0008 + 25531894-25532014,25532029-25532589,25533412-255335... 33 0.19
12_01_0250 - 1852619-1854124,1855224-1856153,1856293-1856409,185... 32 0.57
04_04_0746 + 27726736-27727118,27727518-27727544,27728042-277281... 30 2.3
12_01_0800 - 7331444-7331539,7331617-7331742,7331830-7331907,733... 29 3.1
10_03_0014 - 7060587-7060730,7060813-7060981,7061444-7061613,706... 29 3.1
09_06_0081 + 20745627-20748144,20748211-20748308 29 4.0
05_07_0085 - 27591909-27592152,27592232-27592402,27592485-275926... 29 4.0
05_02_0112 + 6739727-6739958,6740048-6740263,6740349-6740774,674... 29 4.0
03_05_0857 - 28288892-28288969,28289478-28289580,28289979-28290109 29 4.0
11_01_0657 + 5322295-5323367,5323436-5323555,5323743-5323791,532... 29 5.3
03_06_0501 - 34380155-34380637,34380961-34381029,34382206-343822... 29 5.3
03_01_0082 + 653041-653137,653219-653496,653596-653689,653804-65... 28 7.1
06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078... 28 9.3
>01_06_0008 +
25531894-25532014,25532029-25532589,25533412-25533501,
25533502-25533683
Length = 317
Score = 33.5 bits (73), Expect = 0.19
Identities = 21/71 (29%), Positives = 28/71 (39%)
Frame = -2
Query: 641 DTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVS 462
D + H S T+ V M +L SP PS A TT F C Y ST +
Sbjct: 123 DVTPHSSPVSLGTINSTVAMEDYRLASSPFPSTTTAAARDLTTASFSGGCDYAERCST-T 181
Query: 461 KTSIIGHKSIG 429
++ G +G
Sbjct: 182 RSIACGANGVG 192
>12_01_0250 -
1852619-1854124,1855224-1856153,1856293-1856409,
1856777-1857157
Length = 977
Score = 31.9 bits (69), Expect = 0.57
Identities = 25/113 (22%), Positives = 51/113 (45%)
Frame = -3
Query: 394 IISTKARSLILSRMFKNI*M*HLLRKDVYELRKLMSTIKLWLRKKVVMCCAIIHYSLKGL 215
++S KA SL +S F ++ + R + + L ST ++ V + CA+ + L +
Sbjct: 222 LLSKKAESLEVSFRFISV----IGRLETLDFSNLRSTFQIKFGVAVAISCALQMHRLLLV 277
Query: 214 RQPSSKVVMLQLINLVSLKRAKQLRVPNVGTAYKIWYIRLTQPRTALVITMVI 56
S + QL + + + KQ+ A + Y++ PRT ++ ++
Sbjct: 278 DDNLSSTSIAQLQKMANFTQPKQMASSVCSPASTLNYLQTPSPRTPKLLARLL 330
>04_04_0746 +
27726736-27727118,27727518-27727544,27728042-27728126,
27729252-27729809
Length = 350
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = -2
Query: 557 PAPSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKS--IGKIPSK 414
P P+LP P PTT + N C +K ++G S +G++P++
Sbjct: 34 PPPALPPPPPPTPTTPSYHNKCPVNTLKFGAC-ADVLGAISGEVGQVPAQ 82
>12_01_0800 -
7331444-7331539,7331617-7331742,7331830-7331907,
7332515-7332747,7332832-7332871,7333016-7333070,
7333158-7333345,7333416-7333475,7333686-7333769,
7334817-7334903,7335178-7335246,7335354-7335410
Length = 390
Score = 29.5 bits (63), Expect = 3.1
Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -2
Query: 551 PSLPQTLAPQPTTGKFKNDCSYKNIKSTVSKTS-IIGHKSIGKIPSKNQLQHIYNQYKGS 375
P+ T A G+ S KS + ++ +G S+ I KN +H + G+
Sbjct: 118 PTGTTTTAAAAAAGETDGKSSEGKEKSPIKRSKGSLG--SLNMITGKNSTEH--GKTSGA 173
Query: 374 QSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQALVEKEGGDV 249
++ + S+SEG +Q D HH+ +++ G+V
Sbjct: 174 SANGAISQSGESGSESSSEGSEANSQNDSHHKESGQEQDGEV 215
>10_03_0014 -
7060587-7060730,7060813-7060981,7061444-7061613,
7061701-7061879,7061978-7062043,7062394-7062567,
7062669-7062967,7063243-7063343,7063600-7063684,
7063797-7063947,7064267-7064451,7065599-7065786
Length = 636
Score = 29.5 bits (63), Expect = 3.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +2
Query: 248 THH-HLLSQPELDGGHQFAQFVNVLPKQMSHSDVLEHSAEYETASLCTDYKYAAT 409
THH H ++ P + +F +VL +S S++ EH+ +YE S T AT
Sbjct: 94 THHQHHITVPTITVSDSDLKFTHVL-YNLSPSELYEHAIKYEKGSFITSSGALAT 147
>09_06_0081 + 20745627-20748144,20748211-20748308
Length = 871
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/27 (48%), Positives = 13/27 (48%)
Frame = -2
Query: 605 TLGQPVEMLPAKLFHSPAPSLPQTLAP 525
TL P PA FH P P P T AP
Sbjct: 268 TLAPPAPTPPAPTFHVPTPPTPATPAP 294
>05_07_0085 -
27591909-27592152,27592232-27592402,27592485-27592648,
27592775-27593317,27593399-27593860,27593939-27594672,
27594761-27594890
Length = 815
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = -2
Query: 533 LAPQPTTGKFKNDCSYKNIKSTVSKTSIIGH 441
LAP+P GK N K + ++SI+GH
Sbjct: 609 LAPEPKRGKAATSMPLSNAKRKMRESSIVGH 639
>05_02_0112 +
6739727-6739958,6740048-6740263,6740349-6740774,
6740992-6741080,6741259-6741387,6741788-6742018
Length = 440
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -2
Query: 104 YTSYPTSXRTGHYHGNPRSTCNLPINRYKT 15
YT Y RT H +G P + NL + +KT
Sbjct: 278 YTPYIQFARTPHLYGRPATDTNLTVTSHKT 307
>03_05_0857 - 28288892-28288969,28289478-28289580,28289979-28290109
Length = 103
Score = 29.1 bits (62), Expect = 4.0
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = -3
Query: 193 VMLQLINLVSLKRAKQLRVPNVGTAYKIWYIR-LTQPRTALVITMVIRGPPV 41
V+L + LV R K LR+P + W ++ +T+ R LV T +I P V
Sbjct: 16 VLLLVARLVRQDREKSLRLPGYPVGWSRWLVKPITRFRKNLVHTKIICLPVV 67
>11_01_0657 +
5322295-5323367,5323436-5323555,5323743-5323791,
5323968-5324084,5324200-5324268,5324394-5324488,
5325183-5325521,5327043-5327084,5327814-5327907,
5328121-5328190,5328719-5329677
Length = 1008
Score = 28.7 bits (61), Expect = 5.3
Identities = 26/127 (20%), Positives = 51/127 (40%)
Frame = -2
Query: 482 NIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRT 303
N+K + + S K+ + Q + Q H Q +++ +A++ L
Sbjct: 218 NVKIEPQQLQALRSLSAVKMEQPTSDPSAFLQQQQQQQHLLQLTKQNPQAAAAAQLNLLQ 277
Query: 302 AQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFEQGGDASINKLGVPEKSETTKSAKCRN 123
Q + Q +++ +L+N PLQ +L+ + S+N + P KS + C
Sbjct: 278 QQRILQMQQQQQQQQQQILKNLPLQRNQLQQQ-QLLRQQSLN-MRTPGKSAPYEPGTCAK 335
Query: 122 GLQDMVY 102
L +Y
Sbjct: 336 RLTHYMY 342
>03_06_0501 -
34380155-34380637,34380961-34381029,34382206-34382229,
34382622-34382786
Length = 246
Score = 28.7 bits (61), Expect = 5.3
Identities = 22/96 (22%), Positives = 40/96 (41%)
Frame = -2
Query: 488 YKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGRL 309
Y+ I S + ++ G + I K ++I + + H N+ + + L
Sbjct: 105 YRAITSAYYRGAV-GALLVYDITKKQTFENIQRWLRELRDHADSNIVIMMVGNKSDLNHL 163
Query: 308 RTAQTDVHHQALVEKEGGDVLRNNPLQPKRLEATFE 201
R+ + QAL EKEG L + L+ +E F+
Sbjct: 164 RSVPEE-DGQALAEKEGLSFLETSALEALNVEKAFQ 198
>03_01_0082 +
653041-653137,653219-653496,653596-653689,653804-653886,
654027-654247,654395-654533,654628-654710,654824-655036,
655099-655494,655587-655758,656085-656276,656363-656569,
656661-656753,656957-657156,657329-657838,658114-658184,
658322-658963,659057-659207,659425-659665
Length = 1360
Score = 28.3 bits (60), Expect = 7.1
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +3
Query: 6 YSLGFVTIDWQITGGPRITMVMTSAVRGWVRRIYHIL*AVPTFGTLSCFALFRD 167
Y++GF + D+ I T ++ + GW R + L VP + +CFA +D
Sbjct: 706 YAIGFTSADFIIWDLENETKLLQISCGGWRRPYSYYLGMVPEY--QNCFAFVKD 757
>06_02_0187 +
12805788-12807007,12807059-12807186,12807811-12807859,
12808508-12808853
Length = 580
Score = 27.9 bits (59), Expect = 9.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -2
Query: 596 QPVEMLPAKLFHSPAPSLPQTLAPQPTTG 510
QP+ +LPA L SP P LP++ PT+G
Sbjct: 52 QPLVLLPAALSSSPCPLLPRS----PTSG 76
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,233,649
Number of Sequences: 37544
Number of extensions: 425030
Number of successful extensions: 1249
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1248
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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