Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f07
(762 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF498094-1|AAM44808.1| 592|Homo sapiens amphiphysin I variant C... 34 0.48
EF015904-1|ABM64215.1| 1281|Homo sapiens period 1 protein. 32 1.9
CR589951-1|CAM12871.1| 712|Homo sapiens phosphatase and actin r... 31 4.5
CR391992-3|CAM12872.1| 712|Homo sapiens phosphatase and actin r... 31 4.5
CR391992-2|CAI20111.2| 702|Homo sapiens phosphatase and actin r... 31 4.5
BC068508-1|AAH68508.1| 630|Homo sapiens PHACTR4 protein protein. 31 4.5
BC029266-1|AAH29266.1| 702|Homo sapiens phosphatase and actin r... 31 4.5
BC021247-1|AAH21247.2| 686|Homo sapiens PHACTR4 protein protein. 31 4.5
AL840643-2|CAM12873.1| 712|Homo sapiens phosphatase and actin r... 31 4.5
AL840643-1|CAH73869.2| 702|Homo sapiens phosphatase and actin r... 31 4.5
AL670471-1|CAM12870.1| 702|Homo sapiens phosphatase and actin r... 31 4.5
AK025436-1|BAB15130.1| 654|Homo sapiens protein ( Homo sapiens ... 31 4.5
AC004381-3|AAC31669.1| 426|Homo sapiens Unknown gene product pr... 31 5.9
AF102137-1|AAF15544.1| 1290|Homo sapiens PER1 protein. 30 7.8
AF022991-1|AAC51765.1| 1290|Homo sapiens Rigui protein. 30 7.8
AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein. 30 7.8
AB030817-1|BAA94085.1| 1290|Homo sapiens period1 protein. 30 7.8
AB002107-1|BAA22633.1| 1290|Homo sapiens hPer protein. 30 7.8
>AF498094-1|AAM44808.1| 592|Homo sapiens amphiphysin I variant CT4
protein.
Length = 592
Score = 34.3 bits (75), Expect = 0.48
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 317 LPKQMSHSDVLEHSAEYETASLCTDYKYAATDSCWEFS 430
L +HSDV+EH E + L D + A SCWE S
Sbjct: 389 LDNSWTHSDVVEHKEELKVDLLAGDCREQAIASCWEQS 426
>EF015904-1|ABM64215.1| 1281|Homo sapiens period 1 protein.
Length = 1281
Score = 32.3 bits (70), Expect = 1.9
Identities = 16/31 (51%), Positives = 17/31 (54%)
Frame = -2
Query: 611 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
Y L P E P HSP+PSLP LAP P
Sbjct: 927 YGALQTPAEGPPTPASHSPSPSLP-ALAPSP 956
>CR589951-1|CAM12871.1| 712|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 712
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 307 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 365
>CR391992-3|CAM12872.1| 712|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 712
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 307 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 365
>CR391992-2|CAI20111.2| 702|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 702
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 297 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 355
>BC068508-1|AAH68508.1| 630|Homo sapiens PHACTR4 protein protein.
Length = 630
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 281 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 339
>BC029266-1|AAH29266.1| 702|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 702
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 297 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 355
>BC021247-1|AAH21247.2| 686|Homo sapiens PHACTR4 protein protein.
Length = 686
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 281 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 339
>AL840643-2|CAM12873.1| 712|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 712
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 307 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 365
>AL840643-1|CAH73869.2| 702|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 702
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 297 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 355
>AL670471-1|CAM12870.1| 702|Homo sapiens phosphatase and actin
regulator 4 protein.
Length = 702
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 297 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 355
>AK025436-1|BAB15130.1| 654|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21783 fis, clone HEP00284. ).
Length = 654
Score = 31.1 bits (67), Expect = 4.5
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
Frame = -2
Query: 689 KXGIQQENIK--EPIFXIDTSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
K GI ++ E I T RE +T E+LP SP+P LP + P+P
Sbjct: 249 KRGIPSTSVPTLESAAAITTKTPSDEREKSTCSMGSELLPMISPRSPSPPLPTHIPPEP 307
>AC004381-3|AAC31669.1| 426|Homo sapiens Unknown gene product
protein.
Length = 426
Score = 30.7 bits (66), Expect = 5.9
Identities = 18/75 (24%), Positives = 32/75 (42%)
Frame = -2
Query: 491 SYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASEGR 312
S N+KS++ + S+G++ S IY Q +G H N + + +
Sbjct: 55 SLHNVKSSLPLFNTKSSTSVGQLQSPTLNSPIYMQKQGKNEHLAFNTKSKASTVGSELVL 114
Query: 311 LRTAQTDVHHQALVE 267
+ T VHH + +E
Sbjct: 115 VSTTVPTVHHVSDLE 129
>AF102137-1|AAF15544.1| 1290|Homo sapiens PER1 protein.
Length = 1290
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 611 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
Y L P E P HSP+PSLP L P P
Sbjct: 936 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 965
>AF022991-1|AAC51765.1| 1290|Homo sapiens Rigui protein.
Length = 1290
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 611 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
Y L P E P HSP+PSLP L P P
Sbjct: 936 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 965
>AB088477-1|BAC06326.2| 1332|Homo sapiens KIAA0482 protein protein.
Length = 1332
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 611 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
Y L P E P HSP+PSLP L P P
Sbjct: 978 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 1007
>AB030817-1|BAA94085.1| 1290|Homo sapiens period1 protein.
Length = 1290
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 611 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
Y L P E P HSP+PSLP L P P
Sbjct: 936 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 965
>AB002107-1|BAA22633.1| 1290|Homo sapiens hPer protein.
Length = 1290
Score = 30.3 bits (65), Expect = 7.8
Identities = 15/31 (48%), Positives = 16/31 (51%)
Frame = -2
Query: 611 YNTLGQPVEMLPAKLFHSPAPSLPQTLAPQP 519
Y L P E P HSP+PSLP L P P
Sbjct: 936 YGALQTPAEGPPTPASHSPSPSLP-ALPPSP 965
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 108,942,833
Number of Sequences: 237096
Number of extensions: 2372108
Number of successful extensions: 5931
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 5502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5929
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9144232952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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