Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f07
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical pr... 33 0.22
AF047655-5|AAC04399.1| 820|Caenorhabditis elegans Hypothetical ... 31 0.68
Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical pr... 31 1.2
U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein ... 30 2.1
EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transport... 30 2.1
Z81477-4|CAB03925.2| 279|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical pr... 29 3.6
U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical p... 28 6.3
Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical pr... 28 6.3
U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical pr... 28 8.3
>Z68318-4|CAA92693.2| 1170|Caenorhabditis elegans Hypothetical
protein T21B10.3 protein.
Length = 1170
Score = 33.1 bits (72), Expect = 0.22
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 3/46 (6%)
Frame = +3
Query: 372 LRAFVLIINMLQLILAGNFPYRLVTNYR---CFANSGLNILVTTIV 500
L+A + + MLQ +LA N R++TNY+ F + G N L T+I+
Sbjct: 475 LKAVEIFVKMLQRLLANNNNARMLTNYQFSSSFFDDGNNYLPTSII 520
>AF047655-5|AAC04399.1| 820|Caenorhabditis elegans Hypothetical
protein C17B7.5 protein.
Length = 820
Score = 31.5 bits (68), Expect = 0.68
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -2
Query: 524 QPTTGKFKNDC-SYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQ 348
+ TT ND S +++ ST GH +G+I +N ++ Y+ + + SHTQ N
Sbjct: 611 ETTTPSTSNDTESNQDVISTPLLAWRQGHIDLGRISRENHVKFTYDVMRDTYSHTQLNGS 670
Query: 347 EHLNVTSASEGRL 309
++ A+ R+
Sbjct: 671 SYVPYNVANIERV 683
>Z78417-5|CAB01686.1| 1224|Caenorhabditis elegans Hypothetical
protein C35C5.6 protein.
Length = 1224
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/77 (19%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = -2
Query: 449 IGHKSIGKIPSKNQLQ-HIYNQYKGSQSHTQQNVQEHLNVTSASEGRLRTAQTDVHHQAL 273
+ + S+ + PS N+ + + + + Q H + + EH+ VTS+ + ++ + +
Sbjct: 314 VSNDSVLRYPSGNKEEMKLQSDFSSPQGHKRHHSDEHVRVTSSMSNGIERNESFGNESGI 373
Query: 272 VEKEGGDVLRNNPLQPK 222
V +R P + K
Sbjct: 374 VSNGSSPSIREEPTKVK 390
>U97407-4|AAB52482.3| 1272|Caenorhabditis elegans P-glycoprotein
related protein 2 protein.
Length = 1272
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 455 SIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASE 318
+++GH GK L+ YNQ KG N++ +LN++S E
Sbjct: 1060 ALVGHSGCGKSTIMGLLERFYNQDKGMIMIDGDNIR-NLNISSLRE 1104
>EF205592-1|ABM92304.1| 1272|Caenorhabditis elegans ABC transporter
PGP-2 protein.
Length = 1272
Score = 29.9 bits (64), Expect = 2.1
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = -2
Query: 455 SIIGHKSIGKIPSKNQLQHIYNQYKGSQSHTQQNVQEHLNVTSASE 318
+++GH GK L+ YNQ KG N++ +LN++S E
Sbjct: 1060 ALVGHSGCGKSTIMGLLERFYNQDKGMIMIDGDNIR-NLNISSLRE 1104
>Z81477-4|CAB03925.2| 279|Caenorhabditis elegans Hypothetical
protein C27C7.5 protein.
Length = 279
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 414 LAGNFPYRLVTNYRCFANSGLNILVTTIVFKFS 512
++G+FP ++ + + F NS NI T ++KFS
Sbjct: 102 ISGSFPSKMRSMWETFTNSNYNITFTGDLWKFS 134
>U41027-7|AAP46276.1| 1465|Caenorhabditis elegans Hypothetical protein
R08E3.1b protein.
Length = 1465
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 149 TTKSAKCRNGLQDMVYTSYPTSXRTG----HYHGNPRSTC 42
TT+++ N +Q V T + TS H HG+P +TC
Sbjct: 956 TTRTSTLTNRIQQFVLTCFKTSYANNDTSCHGHGSPMATC 995
>U41027-6|AAC48194.5| 1512|Caenorhabditis elegans Hypothetical protein
R08E3.1a protein.
Length = 1512
Score = 29.1 bits (62), Expect = 3.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 149 TTKSAKCRNGLQDMVYTSYPTSXRTG----HYHGNPRSTC 42
TT+++ N +Q V T + TS H HG+P +TC
Sbjct: 956 TTRTSTLTNRIQQFVLTCFKTSYANNDTSCHGHGSPMATC 995
>Z70686-10|CAD21656.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 638 TSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQ 522
+S SH Y+ L P LF P PSL LAPQ
Sbjct: 135 SSSQNSHENYDNLYHTDNSSPLLLFQPP-PSLRPVLAPQ 172
>Z70683-8|CAD21626.1| 533|Caenorhabditis elegans Hypothetical
protein F13B12.6 protein.
Length = 533
Score = 28.3 bits (60), Expect = 6.3
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = -2
Query: 638 TSKHQSHREYNTLGQPVEMLPAKLFHSPAPSLPQTLAPQ 522
+S SH Y+ L P LF P PSL LAPQ
Sbjct: 135 SSSQNSHENYDNLYHTDNSSPLLLFQPP-PSLRPVLAPQ 172
>U23516-9|AAG38884.1| 1203|Caenorhabditis elegans Hypothetical protein
B0416.1 protein.
Length = 1203
Score = 27.9 bits (59), Expect = 8.3
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = -2
Query: 542 PQTLAPQPTTGKFKNDCSYKNIKSTVSKTSIIGHKSIGKIPSKNQLQHIYNQYKGSQSHT 363
P+ L P PT G +D S N +ST S+ G + + + S +++ H + + S S +
Sbjct: 845 PKQLLPPPTKGVSSDDDSQHN-RSTAK--SVSGRQFVPSLGSVSEVDHSTGEEQSSDSES 901
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,358,030
Number of Sequences: 27780
Number of extensions: 377915
Number of successful extensions: 1347
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1347
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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