Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f04
         (772 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0064 - 20385290-20385346,20385452-20387133,20387266-203880...    31   1.0  
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653...    29   4.1  
02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587           28   7.2  

>03_05_0064 -
           20385290-20385346,20385452-20387133,20387266-20388083,
           20388184-20388303,20389036-20389305,20390094-20390269
          Length = 1040

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 10  CENNKCAYE*QRMFYTIQRYSSHYSILDNDKLTCYLYENLTCKANFYHRSDCRAELGFRC 189
           C  N+   E QR+   +   ++H+S +D  +   Y+ +  TCK    H+  C  +L F  
Sbjct: 228 CTQNRSYQEVQRLPTEVNFPNAHFSAIDKARHRSYMEKFQTCKK---HQGTCSKDLMFNI 284

Query: 190 CYYSI 204
             +S+
Sbjct: 285 SDHSL 289


>03_02_0870 +
           11964135-11964224,11965013-11965175,11965262-11965380,
           11965971-11966083,11966179-11966234,11966320-11966417,
           11966588-11966725,11966820-11967125,11967208-11967471,
           11967587-11967754,11967838-11968056,11968115-11968158,
           11968761-11968830,11968949-11969110,11969672-11969779,
           11969873-11969910,11970121-11970265,11970800-11970926,
           11971037-11971230,11971529-11971659,11972014-11972089,
           11972218-11972328,11972465-11972647,11973264-11973407,
           11973946-11973969,11974555-11974728,11974808-11975155,
           11975232-11975561,11975776-11975961,11976052-11977026,
           11977145-11977399
          Length = 1852

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
 Frame = -1

Query: 301 CYKGDIVKDKSIFSNNFRLCYPTTLLNHKIYFKSNNSSIETRAQLGNPICDKSLLYTSNS 122
           CYK D VKD   +   +    P +  N    F+  ++ +ET  QL N    K    T + 
Sbjct: 47  CYKADFVKDDCKY-GRYESVAPPSFQNQ--IFEGPDTDLETELQLSNDRQSKPDEVTEDD 103

Query: 121 --HTSNKSIYHYQV 86
              TS + +Y  +V
Sbjct: 104 MPSTSGRQLYETEV 117


>02_01_0342 + 2451314-2451345,2451536-2451730,2452548-2452587
          Length = 88

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 16/57 (28%), Positives = 29/57 (50%)
 Frame = -3

Query: 740 VIDFIKIKLFSFNEKFLVNYLYTYIFM*IILRNYCAAHL*IHYFLISPLKTVHMKLF 570
           +ID  K K + ++ K L    + Y+    I  N+C++   + + LI  LK  H +L+
Sbjct: 3   IIDNAKTKRYKYHLKVLHVLFFQYMHRLEIFSNFCSSL--VTFLLIEHLKKPHERLY 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,817,349
Number of Sequences: 37544
Number of extensions: 286268
Number of successful extensions: 485
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2075009728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)