Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f04
         (772 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065772-1|BAC05992.1|  301|Homo sapiens seven transmembrane hel...    31   3.5  
AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens ...    31   4.6  

>AB065772-1|BAC05992.1|  301|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 301

 Score = 31.5 bits (68), Expect = 3.5
 Identities = 19/78 (24%), Positives = 35/78 (44%)
 Frame = -3

Query: 620 IHYFLISPLKTVHMKLFVDLQTFWGCYFLFTMSRLLCYHNIVIFIVNTFEIHCIICKDGF 441
           ++Y  I+P   V +       +F GC     M  L     +++ +V  ++ +  ICK   
Sbjct: 57  VYYTAIAPKMIVDLLSEKKTISFQGCMAQLFMDHLFAGAEVILLVVMAYDQYVAICKPLH 116

Query: 440 NG*YLIFLTRFFLIIVLL 387
              YLI + R   +++LL
Sbjct: 117 ---YLIIMNRRVCVLMLL 131


>AK127397-1|BAC86958.1|  130|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45488 fis, clone BRTHA2003759. ).
          Length = 130

 Score = 31.1 bits (67), Expect = 4.6
 Identities = 18/80 (22%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = -3

Query: 731 FIKIKLFSFNEKFLVNYLYTYIFM*IILRNYCAAHL*IH-YFLISPLKTVHMKLFVDLQT 555
           +I I ++ +   ++  Y++TYI++ I +  Y   ++ ++ Y  I     +++ +F+ L  
Sbjct: 24  YIYIYVYVYIYLYIYFYIFTYIYLYIFIYIYICLYIYLYIYLYIFTYIYIYLHIFIYLHI 83

Query: 554 F-WGCYFLFTMSRLLCYHNI 498
           F + C  L+    +  Y NI
Sbjct: 84  FIYICICLYIFIYVFIYINI 103


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,334,082
Number of Sequences: 237096
Number of extensions: 1813308
Number of successful extensions: 6839
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6817
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)