Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f04
         (772 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical pr...    31   0.91 
Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical pr...    29   2.8  
Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF100669-7|AAK39263.2|  549|Caenorhabditis elegans Hypothetical ...    28   6.4  
AF038604-6|AAB92014.2|  243|Caenorhabditis elegans Hypothetical ...    28   6.4  
Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical pr...    28   8.5  
AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine r...    28   8.5  

>Z78062-4|CAB01498.2|  341|Caenorhabditis elegans Hypothetical
           protein F16D3.6 protein.
          Length = 341

 Score = 31.1 bits (67), Expect = 0.91
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -2

Query: 432 IFNILDTIFFNYSVIMYYFISIRFVIAIIN*FQIKLLNLEQQL 304
           +  I  T+FFN++ I+  F+ +RFV    N  Q K + L Q L
Sbjct: 198 LVRIFSTLFFNFAAIIVNFVILRFVKHFEN-IQSKRIQLTQSL 239


>Z81533-3|CAB04335.1|  327|Caenorhabditis elegans Hypothetical
           protein F36G9.5 protein.
          Length = 327

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 26/127 (20%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
 Frame = -2

Query: 684 LFIYIHIYVNYFTQLLRCTFINPLLSYLSVKNCTHEIICGLTNILGMLFFVYNVQTIVLS 505
           +FI I  Y+NY T +  C      L+ +   +   +I   +   L ++ F+Y +  I + 
Sbjct: 114 IFIIIVFYINYATMIFPCLVALLRLNLIVFPSSYQKINTKIIKCLPIV-FIYPILCIAIM 172

Query: 504 *YSDIHCEYF*NPLYNL*RRFQRLIFNILDTIF---FNYSVIMYYFISIRFVIAIIN*FQ 334
              +  C +   P+Y        ++  + DT+F    NY ++   F+ +   + I     
Sbjct: 173 FPGNGFCSHVAYPIYG------SIMLRVTDTMFGWTNNYILMFNTFLWVSICLGINAVLI 226

Query: 333 IKLLNLE 313
           +KL+  +
Sbjct: 227 VKLIKFK 233


>Z81528-1|CAB04282.1|  345|Caenorhabditis elegans Hypothetical
           protein F35E2.1 protein.
          Length = 345

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
 Frame = -2

Query: 432 IFNILDTIFFNYSVIMYYFISIRFVIAIIN---*FQIKLLNLEQQL 304
           +  I  T+FFN++ I+  F+ +RFV    N     Q K++ L Q L
Sbjct: 198 LVRIFSTLFFNFAAIIVNFVILRFVKHFENENKNIQSKIIQLTQSL 243


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = -1

Query: 307 AFCYKGDIVKDKSIFSNNFRLCYPTT-LLNHKIYFKSNNSSIET 179
           AF    DI +  S  +++F + YPTT LL HKI   +N   +ET
Sbjct: 105 AFFALMDIFESNS--TDSFEITYPTTELLGHKILLANNLYGVET 146


>AF100669-7|AAK39263.2|  549|Caenorhabditis elegans Hypothetical
           protein R11E3.1 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/76 (27%), Positives = 31/76 (40%)
 Frame = +2

Query: 140 QTFITDRIAELSSGFDAAIIRFEINFMI*QSCWIA*TEIVRKNTFVFYYITFITKSCCSK 319
           +T  T      +  +   ++ FEI F      W   T  V KN  V      I +SC  K
Sbjct: 381 ETITTRFFTPKTDVYSYGVMCFEI-FSNGAEPWEGVTNTVTKNNVVNGINLVIPESCPEK 439

Query: 320 FRSFI*NQLIIAITNR 367
           FRSF+  ++ +    R
Sbjct: 440 FRSFVHEKIFVVDPKR 455


>AF038604-6|AAB92014.2|  243|Caenorhabditis elegans Hypothetical
           protein B0546.5 protein.
          Length = 243

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -2

Query: 432 IFNILDTIFFNYSVIMYYFISIRFV 358
           +  I  T+FFN++ I+  F+ +RFV
Sbjct: 198 LVRIFSTLFFNFAAIIVNFVILRFV 222


>Z83116-8|CAB05567.1|  397|Caenorhabditis elegans Hypothetical
           protein M01B2.10 protein.
          Length = 397

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = -1

Query: 379 FHF-NSVCNCNY*LISDKTSEFGATAFCYKGDIVKDKSIFSNNFRLCYPTTLLNHKIYFK 203
           F+F +  CN  Y   +    E G+T++ Y  + +     FSN F    PT +    +YF 
Sbjct: 285 FYFADFYCNKAYHYATIVICEIGSTSYKYCNEKLIKLDPFSNPFIKLVPTAIPGQWLYFN 344

Query: 202 SNNSSIE 182
           +    +E
Sbjct: 345 NRTVWVE 351


>AF039044-11|AAG24131.1|  333|Caenorhabditis elegans Serpentine
           receptor, class j protein37 protein.
          Length = 333

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 444 FQRLIFNILDTIFFNYSVIMYYFISIRFVIAIIN 343
           F  LIF    T F NY  ++ YF S   V ++ N
Sbjct: 26  FVYLIFTEKSTKFGNYKYLLLYFASFNLVYSVAN 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,895,793
Number of Sequences: 27780
Number of extensions: 336460
Number of successful extensions: 786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)