Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f04
         (772 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   3.1  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   3.1  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   3.1  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   3.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    22   5.5  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   5.5  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.6  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.6  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   9.6  

>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 283 VKDKSIFSNNFRLCYPTTLLNHKIYFKSN 197
           + + +I +NN++  Y     N K+Y+  N
Sbjct: 85  LSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 283 VKDKSIFSNNFRLCYPTTLLNHKIYFKSN 197
           + + +I +NN++  Y     N K+Y+  N
Sbjct: 85  LSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 283 VKDKSIFSNNFRLCYPTTLLNHKIYFKSN 197
           + + +I +NN++  Y     N K+Y+  N
Sbjct: 85  LSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 283 VKDKSIFSNNFRLCYPTTLLNHKIYFKSN 197
           + + +I +NN++  Y     N K+Y+  N
Sbjct: 85  LSNNTIHNNNYKYNYNNNNYNKKLYYNIN 113


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = -2

Query: 498 SDIHCEYF*NPLYNL*RRFQRLIFNILDTIFFNYSVIMY 382
           +D+  +   N +Y L   FQ+L+F+  D    N+ + M+
Sbjct: 349 NDLSIDRSTNTMYVLSDNFQQLLFSKYDAKKRNFFITMF 387


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 514 NSLDIVNKK*HPQNVCKSTNNFMCTVFN 597
           +SL   N K  P + C S  N  C++ N
Sbjct: 149 HSLSDYNDKPIPASCCNSPENNTCSISN 176


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 403 KKNRVKNIKY*PLKPSLQIIQWISKVFTMNI 495
           K+ +V N+ Y   +P+L  I W ++    NI
Sbjct: 36  KQKKVYNLLYRVAQPALANITWYNEGQAWNI 66


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 403 KKNRVKNIKY*PLKPSLQIIQWISKVFTMNI 495
           K+ +V N+ Y   +P+L  I W ++    NI
Sbjct: 36  KQKKVYNLLYRVAQPALANITWYNEGQAWNI 66


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 494 IFIVNTFEIHCIICKDGFNG*YLI 423
           I IVN F I   I K+G +  YLI
Sbjct: 480 IGIVNQFHILQFITKNGTSNNYLI 503


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 198,068
Number of Sequences: 438
Number of extensions: 4174
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)