Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f03
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces p...    34   0.018
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    30   0.30 
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb...    28   1.2  
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr...    26   6.4  
SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|ch...    25   8.4  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    25   8.4  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.4  

>SPCC1840.06 |atp5||F0-ATPase delta subunit|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 216

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -1

Query: 733 TEKVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
           + KV PSI+GG+IV I D  +D+S+  ++     +L + +
Sbjct: 177 SNKVTPSIIGGLIVEIGDNILDVSVGSRLNNLNKLLSEPI 216


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 30.3 bits (65), Expect = 0.30
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = -2

Query: 336 FSVDPKVYSVGGNGACHYSLKTGRENPQ 253
           FS    V+SVG NGA H  + T  ENPQ
Sbjct: 264 FSAQSFVFSVGPNGALH-QVNTSTENPQ 290


>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 477

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
 Frame = -3

Query: 326 ILKFILSEEMEPVITR*KLDVRIHNSCSPLILFTTFSPLANCRVSLSTAIL*KFLGENS- 150
           ILK +LS + +  +      V + +  SPL++F   +P  N        +    L ENS 
Sbjct: 174 ILKDLLSLQFQQALLAISPSVIVTSEHSPLVMFQAINPYLNNNYYTHDTVDTNALEENSW 233

Query: 149 VAEFQHQILGGFMSPK 102
           + +   Q L  F +P+
Sbjct: 234 ITKLDMQSLQHFRTPR 249


>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1517

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = +1

Query: 262 LTSSFQRVMTGSISSDRINFRIHAEKIPIILADSPCTNPPKD 387
           L ++  R ++        +  +++E +P++L +SP  N P +
Sbjct: 709 LVNTIMRKVSKVFDCSAFDIFVNSEHLPVVLLESPAANIPTE 750


>SPCC576.06c |||tyrosine-tRNA ligase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 445

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 453 ILVGTTNV--TIANDNICMVTRVPILWGISTGRIGQDNGNLFSVDPKV 316
           I  GT  V  T  N N+  +T  P+L   S  ++G+  GN   +DPK+
Sbjct: 214 ITAGTDLVRRTHPNANVYALT-TPLLTSSSGQKLGKSAGNAIWLDPKL 260


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 27/104 (25%), Positives = 42/104 (40%)
 Frame = +1

Query: 253 LWILTSSFQRVMTGSISSDRINFRIHAEKIPIILADSPCTNPPKDRHPGYHANIIVRNGH 432
           LW L S F + +  SI   +++F I +    ++L    C    K     +     ++ G 
Sbjct: 80  LWFLWSCFLKPIL-SIQP-KLSFFIDSSLSRLLLLCFGCLKLSKSTSGSFVQGDSLQPGD 137

Query: 433 IRGTYKYGAVSFL*K*LSCLKNCSGGFSGTNTAIV*IFITTAYF 564
           I        +  L   LSCL NC+     + T+ V I    AYF
Sbjct: 138 ILAVNHSSPLDVLV--LSCLYNCTFAVCDSKTSNVSIISAQAYF 179


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +1

Query: 1    KLFC*FIRIIFQEFPEERTSQSAAEAMDRNGIMYFGLMN 117
            KLF  F  I  +EF E+ TSQ+    M  N ++ +G+++
Sbjct: 2354 KLFSCF-SIYCREFDEDLTSQAQDTEMLHNNLLKYGIID 2391


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,387,043
Number of Sequences: 5004
Number of extensions: 75994
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)