Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f03
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0928 + 26024589-26024645,26024900-26024956,26025464-260257...    32   0.54 
07_01_0010 + 72162-74303,74470-74545,75971-76043,76496-76540,779...    31   0.94 
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19...    30   2.2  
11_01_0456 + 3522599-3523921,3524005-3524027,3524097-3525265,352...    29   3.8  
01_03_0293 + 14742630-14743042,14743073-14743370                       29   3.8  
12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,116...    29   5.0  
11_06_0129 - 20397179-20397537,20397749-20400497                       29   5.0  
10_08_0157 - 15292774-15293397,15296583-15296804                       28   6.6  
08_02_0227 - 14485676-14487316                                         28   6.6  
06_03_0640 - 23059473-23060489,23060592-23060651,23063163-230632...    28   8.8  
02_04_0061 + 19361562-19363130                                         28   8.8  

>06_03_0928 +
           26024589-26024645,26024900-26024956,26025464-26025707,
           26026126-26026238,26026675-26026761,26026843-26026962
          Length = 225

 Score = 31.9 bits (69), Expect = 0.54
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -1

Query: 730 EKVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQ 620
           +K+D SIMGG+++    K  DMSI  + +     L+Q
Sbjct: 185 QKIDYSIMGGLVIQFGQKVFDMSIKTRAKQMEMFLRQ 221


>07_01_0010 +
           72162-74303,74470-74545,75971-76043,76496-76540,
           77916-78116,78463-78541,78637-78678,78788-78847,
           79087-80484,80777-80902,81037-81300
          Length = 1501

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = +1

Query: 133 CWNSATEFSPKNFYKIAVDKETLQFASGLKVV 228
           CW S+ EFS    YK   D + LQFA+G+K +
Sbjct: 858 CWISSYEFSSTFMYKYHEDWQ-LQFAAGIKTI 888


>01_01_0025 +
           188915-189132,190625-190705,191350-191506,191958-192161,
           192248-192356,192401-192496,192724-193994,194200-194384,
           194619-195055,197034-197077,197830-199036,199253-199479
          Length = 1411

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 610 IKQTVSEYQCTFEFFSLYSCLCV 678
           ++Q  S+Y  T+EFF L  C C+
Sbjct: 402 VQQNASQYCSTYEFFHLIMCACI 424


>11_01_0456 +
           3522599-3523921,3524005-3524027,3524097-3525265,
           3525373-3525737
          Length = 959

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +2

Query: 317 TLGS--TLKRFPLSWPILPVLIPQRIGTLVTMQILSFA--MVTFVVPTSMALYHF 469
           TLG   +L+   LSW     +IP  IG + ++++L F+   +T  +P+ +   HF
Sbjct: 477 TLGDFESLEYIDLSWNNFTGIIPASIGKITSLEVLKFSHNNLTGPIPSLLGDLHF 531


>01_03_0293 + 14742630-14743042,14743073-14743370
          Length = 236

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -2

Query: 459 SAILVGTTNVTIANDNICMVTRVPILWGISTGRIGQDN 346
           SA L G T   + ND +  + R+ I WGI  GR G +N
Sbjct: 191 SAALAGKTASQLPNDELLRLLRLFIHWGIRFGR-GVEN 227


>12_01_0151 - 1158834-1159703,1159917-1160092,1160144-1162097,
            1162360-1162620,1162729-1162916,1164127-1164166
          Length = 1162

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
 Frame = +1

Query: 22   RIIFQEFPEERTSQSAAEAMDRNGIMYFGLMNPPSIWCWNSATEFSPKNFYKIAVDKETL 201
            +++ ++FP     Q  A     N  +  G+ N   +W  + A E S   F   +   + L
Sbjct: 831  KLVLEQFPNLENLQGLARLPSLNTFVLKGMPNLVELWTSSPALESSSICFSVDSPHLKKL 890

Query: 202  QF------ASGLKVVNNIKGEQELWILTSSFQRV 285
            +       +SG +V+ N+ G + L I +S  +++
Sbjct: 891  ELGGMAGSSSGWEVLQNLTGLESLSIYSSDLRQL 924


>11_06_0129 - 20397179-20397537,20397749-20400497
          Length = 1035

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/48 (33%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
 Frame = +2

Query: 317 TLGSTLKRFPLSWPILPVLIPQRIGTLVTMQILSFAMVTFV--VPTSM 454
           +L ++LK   LS+  +   IP+ IG L  +Q+L  A  +F+  +P+S+
Sbjct: 391 SLSTSLKYLSLSYNNILGSIPKDIGNLFNLQVLDLAWNSFIGTLPSSL 438


>10_08_0157 - 15292774-15293397,15296583-15296804
          Length = 281

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +1

Query: 136 WNSATEFSPKNFYKIAVDK-----ETLQFASGLKVVNNI 237
           W SA EF P+ F  I++D      E L F SG ++   I
Sbjct: 183 WKSAEEFKPERFENISIDYNGNNFEFLPFGSGRRICPGI 221


>08_02_0227 - 14485676-14487316
          Length = 546

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
 Frame = -1

Query: 463 IQRHTCRYHECDHCER*YLH-GNQGADPLGD*YRENRPG*WESFQRGS*SLFCRRKWSLS 287
           ++   CR+ E D+C+R  +   ++G   L D ++ +       FQ+G   L C +   + 
Sbjct: 410 LESMACRFDESDYCDRCAVSAADRGRQELNDSWKNSLRKVTVQFQKG--KLTCSQVELVM 467

Query: 286 LLVEN 272
            LVEN
Sbjct: 468 FLVEN 472


>06_03_0640 -
           23059473-23060489,23060592-23060651,23063163-23063283,
           23063476-23065496
          Length = 1072

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 14/32 (43%), Positives = 19/32 (59%)
 Frame = +2

Query: 635 SVHLNFSRYTHVYVFIFNSHDHASHNRWIHFL 730
           ++ L+ S  T+V V IF S +  S N W HFL
Sbjct: 657 TIQLSLSSLTNV-VAIFKSGEKTSTNEWRHFL 687


>02_04_0061 + 19361562-19363130
          Length = 522

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = -3

Query: 104 KYIMPFRSIASAADCEVRSSGN 39
           K  +PF    SAADCEVR + N
Sbjct: 378 KEFLPFEHSPSAADCEVRCARN 399


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,331,385
Number of Sequences: 37544
Number of extensions: 467328
Number of successful extensions: 1197
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1197
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)