Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f03
(733 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ459959-1|CAD31058.1| 462|Anopheles gambiae dopachrome convers... 50 1e-07
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein. 26 1.4
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein. 26 1.4
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr... 25 3.2
U29486-1|AAC46995.1| 695|Anopheles gambiae ATP-binding-cassette... 24 5.6
U29485-1|AAC46994.1| 695|Anopheles gambiae ATP-binding-cassette... 24 5.6
U29484-1|AAC47423.1| 673|Anopheles gambiae ATP-binding-cassette... 24 5.6
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro... 24 5.6
AY330177-1|AAQ16283.1| 166|Anopheles gambiae odorant-binding pr... 23 9.7
AY263175-1|AAP78790.1| 814|Anopheles gambiae TmcA-like protein ... 23 9.7
AJ618926-1|CAF02005.1| 315|Anopheles gambiae odorant-binding pr... 23 9.7
>AJ459959-1|CAD31058.1| 462|Anopheles gambiae dopachrome conversion
enzyme protein.
Length = 462
Score = 49.6 bits (113), Expect = 1e-07
Identities = 28/111 (25%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Frame = +1
Query: 58 SQSAAEAMD-RNGIMYFGLMNPPSIWCWNSATEFSPKNFYKIAVDKETLQFASGLKVVNN 234
SQS+ A D G+++F L+ +I CW+S F+P+N + + + + + L + N
Sbjct: 307 SQSSIHAFDPETGVIFFALIQQNAILCWDSNKPFAPQNMAIVYKNDRDIVYPNDLSIDQN 366
Query: 235 IKGEQELWILTSSFQRVMTGSISSDRINFRIHAEKIPIILADSPC--TNPP 381
+W +T+S +++ ++ D NF + I I+ + C +PP
Sbjct: 367 ----GYVWFMTNSIIKLLYTQLNLDEFNFFVWRANIKQIIKGTVCDPASPP 413
>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
Length = 3320
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 45 GRAYFAISSGSYGSKRHYVLWAHE 116
G+ F S S+G R +V+W HE
Sbjct: 1194 GKNVFVRSMDSFGITRKHVVWRHE 1217
>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
Length = 3318
Score = 25.8 bits (54), Expect = 1.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 45 GRAYFAISSGSYGSKRHYVLWAHE 116
G+ F S S+G R +V+W HE
Sbjct: 1195 GKNVFVRSMDSFGITRKHVVWRHE 1218
>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
precursor protein.
Length = 1623
Score = 24.6 bits (51), Expect = 3.2
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = +3
Query: 351 PGRFSLY*SPKGSAPWLPCKYY 416
P F++Y + PW+P +YY
Sbjct: 153 PESFAIYKRVTPNGPWIPYQYY 174
>U29486-1|AAC46995.1| 695|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 695
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 414 YRSQWSHSWYLQVWRCIISV 473
YRS W +Y +WR +SV
Sbjct: 414 YRSSWWTQFYCILWRSWLSV 433
>U29485-1|AAC46994.1| 695|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 695
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 414 YRSQWSHSWYLQVWRCIISV 473
YRS W +Y +WR +SV
Sbjct: 414 YRSSWWTQFYCILWRSWLSV 433
>U29484-1|AAC47423.1| 673|Anopheles gambiae ATP-binding-cassette
protein protein.
Length = 673
Score = 23.8 bits (49), Expect = 5.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 414 YRSQWSHSWYLQVWRCIISV 473
YRS W +Y +WR +SV
Sbjct: 392 YRSSWWTQFYCILWRSWLSV 411
>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
Length = 2051
Score = 23.8 bits (49), Expect = 5.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 527 VLVPLKPPEQFFRQDSYFYRND 462
VL +KP F+ QDS+F +D
Sbjct: 1686 VLHTVKPDYYFYGQDSHFMNSD 1707
>AY330177-1|AAQ16283.1| 166|Anopheles gambiae odorant-binding
protein AgamOBP50 protein.
Length = 166
Score = 23.0 bits (47), Expect = 9.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 580 VLFCTIEYDNIKQTVSEYQCTFEFFSLYSCLCVYLQFPRSC 702
V C + D I++ Q F++ CV L+ R+C
Sbjct: 103 VTACMAQKDKIREEADVVQSECSMFAVKFHACVSLETMRNC 143
>AY263175-1|AAP78790.1| 814|Anopheles gambiae TmcA-like protein
protein.
Length = 814
Score = 23.0 bits (47), Expect = 9.7
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 124 SIWCWNSATEFSPKNFYKIA 183
S WCW+ +F +KIA
Sbjct: 521 SCWCWDLEKKFPKYGDFKIA 540
>AJ618926-1|CAF02005.1| 315|Anopheles gambiae odorant-binding
protein OBPjj6b protein.
Length = 315
Score = 23.0 bits (47), Expect = 9.7
Identities = 11/41 (26%), Positives = 18/41 (43%)
Frame = +1
Query: 580 VLFCTIEYDNIKQTVSEYQCTFEFFSLYSCLCVYLQFPRSC 702
V C + D I++ Q F++ CV L+ R+C
Sbjct: 252 VTACMAQKDKIREEADVVQSECSMFAVKFHACVSLETMRNC 292
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 847,254
Number of Sequences: 2352
Number of extensions: 19441
Number of successful extensions: 25
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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