Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f03
(733 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X83218-1|CAA58219.1| 213|Homo sapiens ATP synthase, oligomycin ... 43 0.001
CR456822-1|CAG33103.1| 213|Homo sapiens ATP5O protein. 43 0.001
BT019836-1|AAV38639.1| 213|Homo sapiens ATP synthase, H+ transp... 43 0.001
BC022865-1|AAH22865.1| 213|Homo sapiens ATP synthase, H+ transp... 43 0.001
BC021233-1|AAH21233.1| 213|Homo sapiens ATP synthase, H+ transp... 43 0.001
AK222962-1|BAD96682.1| 213|Homo sapiens mitochondrial ATP synth... 43 0.001
AK222608-1|BAD96328.1| 213|Homo sapiens mitochondrial ATP synth... 41 0.005
L21742-1|AAA59116.1| 114|Homo sapiens VH6DJ protein. 32 1.8
AY393329-1|AAR32384.1| 124|Homo sapiens immunoglobulin heavy ch... 32 2.4
AF087417-1|AAC72926.1| 130|Homo sapiens immunoglobulin heavy ch... 31 4.3
L04766-1|AAA56826.1| 126|Homo sapiens immunoglobulin alpha-1 ch... 30 7.4
AB067356-1|BAC02391.1| 120|Homo sapiens immunoglobulin heavy ch... 30 7.4
AM051008-1|CAJ19545.1| 96|Homo sapiens immunoglobulin heavy ch... 30 9.8
>X83218-1|CAA58219.1| 213|Homo sapiens ATP synthase, oligomycin
sensitivity conferring protein protein.
Length = 213
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -1
Query: 727 KVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
K DPSI+GGMIV I +K++DMS+ KIQ +++ V
Sbjct: 176 KTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV 213
>CR456822-1|CAG33103.1| 213|Homo sapiens ATP5O protein.
Length = 213
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -1
Query: 727 KVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
K DPSI+GGMIV I +K++DMS+ KIQ +++ V
Sbjct: 176 KTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV 213
>BT019836-1|AAV38639.1| 213|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, O subunit
(oligomycin protein.
Length = 213
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -1
Query: 727 KVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
K DPSI+GGMIV I +K++DMS+ KIQ +++ V
Sbjct: 176 KTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV 213
>BC022865-1|AAH22865.1| 213|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, O subunit
(oligomycin protein.
Length = 213
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -1
Query: 727 KVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
K DPSI+GGMIV I +K++DMS+ KIQ +++ V
Sbjct: 176 KTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV 213
>BC021233-1|AAH21233.1| 213|Homo sapiens ATP synthase, H+
transporting, mitochondrial F1 complex, O subunit
(oligomycin protein.
Length = 213
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -1
Query: 727 KVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
K DPSI+GGMIV I +K++DMS+ KIQ +++ V
Sbjct: 176 KTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV 213
>AK222962-1|BAD96682.1| 213|Homo sapiens mitochondrial ATP
synthase, O subunit precursor variant protein.
Length = 213
Score = 42.7 bits (96), Expect = 0.001
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = -1
Query: 727 KVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
K DPSI+GGMIV I +K++DMS+ KIQ +++ V
Sbjct: 176 KTDPSILGGMIVRIGEKYVDMSVKTKIQKLGRAMREIV 213
>AK222608-1|BAD96328.1| 213|Homo sapiens mitochondrial ATP
synthase, O subunit precursor variant protein.
Length = 213
Score = 40.7 bits (91), Expect = 0.005
Identities = 18/38 (47%), Positives = 26/38 (68%)
Frame = -1
Query: 727 KVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
K DPSI+GGM V I +K++DMS+ KIQ +++ V
Sbjct: 176 KTDPSILGGMTVRIGEKYVDMSVKTKIQKLGRAMREIV 213
>L21742-1|AAA59116.1| 114|Homo sapiens VH6DJ protein.
Length = 114
Score = 32.3 bits (70), Expect = 1.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 375 SPKGSAPWLPCKYYRSQWSHSWYLQV 452
SP G WL YYRS+W H + + V
Sbjct: 34 SPSGGLEWLGRTYYRSKWYHEYAVSV 59
>AY393329-1|AAR32384.1| 124|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 124
Score = 31.9 bits (69), Expect = 2.4
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +3
Query: 375 SPKGSAPWLPCKYYRSQWSHSWYLQVWRCIISVEITILSEELLRRF 512
SP WL YYRSQWS W+ + S +TI S+ RF
Sbjct: 29 SPSRGLEWLGRTYYRSQWS-KWFSDYAESVKS-RVTINSDTSKNRF 72
>AF087417-1|AAC72926.1| 130|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 130
Score = 31.1 bits (67), Expect = 4.3
Identities = 14/31 (45%), Positives = 16/31 (51%)
Frame = +3
Query: 375 SPKGSAPWLPCKYYRSQWSHSWYLQVWRCII 467
SP WL YYRSQW H + + V II
Sbjct: 42 SPSRGLEWLGRTYYRSQWYHDYAVSVKSRII 72
>L04766-1|AAA56826.1| 126|Homo sapiens immunoglobulin alpha-1 chain
protein.
Length = 126
Score = 30.3 bits (65), Expect = 7.4
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 375 SPKGSAPWLPCKYYRSQWSHSWYLQV 452
SP G WL YYRSQW + + V
Sbjct: 34 SPSGGLEWLGRTYYRSQWYNEYAASV 59
>AB067356-1|BAC02391.1| 120|Homo sapiens immunoglobulin heavy chain
VHDJ region protein.
Length = 120
Score = 30.3 bits (65), Expect = 7.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +3
Query: 375 SPKGSAPWLPCKYYRSQWSHSWYLQV 452
SP G WL YYRS+W + + + V
Sbjct: 42 SPSGGLEWLGRTYYRSKWGNDYAVSV 67
>AM051008-1|CAJ19545.1| 96|Homo sapiens immunoglobulin heavy chain
variable region protein.
Length = 96
Score = 29.9 bits (64), Expect = 9.8
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 375 SPKGSAPWLPCKYYRSQWSHSWYLQV 452
SP WL YYRS+W H + L V
Sbjct: 21 SPSRGLEWLGRTYYRSKWYHDYSLYV 46
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,738,407
Number of Sequences: 237096
Number of extensions: 2676081
Number of successful extensions: 4903
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4903
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8679165170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -