Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f03
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase su...    44   8e-05
U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase su...    44   8e-05
Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical pr...    31   0.64 
AF078785-8|AAC27095.1|  658|Caenorhabditis elegans Hypothetical ...    31   0.64 
Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z66520-6|CAA91385.1|  226|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear horm...    29   4.5  
Z34802-3|CAA84333.1|  354|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U80441-5|AAB37654.1|  207|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform a protein.
          Length = 207

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = -1

Query: 733 TEKVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
           T  V PSI+GG++V I DK++D+SIA +++ Y D L  ++
Sbjct: 168 TYAVKPSILGGLVVTIGDKYVDLSIASRVKKYKDALATAI 207


>U80441-4|AAR25649.1|  228|Caenorhabditis elegans Atp synthase
           subunit protein 3,isoform b protein.
          Length = 228

 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 18/40 (45%), Positives = 29/40 (72%)
 Frame = -1

Query: 733 TEKVDPSIMGGMIVGIEDKHIDMSIARKIQMYTDILKQSV 614
           T  V PSI+GG++V I DK++D+SIA +++ Y D L  ++
Sbjct: 189 TYAVKPSILGGLVVTIGDKYVDLSIASRVKKYKDALATAI 228


>Z72502-9|CAE17688.1|  300|Caenorhabditis elegans Hypothetical
           protein C08B6.12 protein.
          Length = 300

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 17/51 (33%), Positives = 24/51 (47%)
 Frame = +1

Query: 523 NTAIV*IFITTAYFMN*VIVLFCTIEYDNIKQTVSEYQCTFEFFSLYSCLC 675
           N+ +V + +T  Y  N    +F  +    I Q   E Q  F FF+LY C C
Sbjct: 217 NSLVVSLLLTANYLYNYFYSMFKPL----ISQQSHELQSAFSFFNLYGCSC 263


>AF078785-8|AAC27095.1|  658|Caenorhabditis elegans Hypothetical
           protein C04E12.10 protein.
          Length = 658

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 136 WNSATEFSPKNFYKIAVDKETLQFASGLKVVNNIKGEQELWILTSSFQRVMTG 294
           +N  T F P +    A++KE   F SG+  +  I  +Q+ W+LT+   R M G
Sbjct: 158 YNKVT-FKPWSVKNFAMEKE---FPSGIGYLQKIIPDQDAWVLTAWIFRAMVG 206


>Z83109-3|CAB05515.2|  300|Caenorhabditis elegans Hypothetical
           protein F44G3.5 protein.
          Length = 300

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/49 (30%), Positives = 23/49 (46%)
 Frame = +1

Query: 523 NTAIV*IFITTAYFMN*VIVLFCTIEYDNIKQTVSEYQCTFEFFSLYSC 669
           N+ +V + +TT Y  N   ++F       + Q   E Q  F FF+ Y C
Sbjct: 217 NSFVVSLLLTTNYIYNHFYLMF----EPTLSQQSPEIQSAFSFFNFYGC 261


>Z66520-6|CAA91385.1|  226|Caenorhabditis elegans Hypothetical
           protein F49E12.8 protein.
          Length = 226

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 17/67 (25%), Positives = 34/67 (50%), Gaps = 1/67 (1%)
 Frame = +1

Query: 142 SATEFSPKNFYKIAVDKETLQFASGLKVVNNIKGEQELWILTSSFQRVMTGSISSDRINF 321
           S  EFS ++ YK   + ++      L V+  +K  ++L ++    Q  +T S+  DR+N 
Sbjct: 149 STAEFSSESLYKHEYEDKSSDDDEDLTVIQQLKSRRKLSMVRQEEQEELTASM--DRMNV 206

Query: 322 -RIHAEK 339
             +H+ +
Sbjct: 207 GSVHSRR 213


>AC006675-12|AAK84548.1|  418|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 99 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = +2

Query: 347 LSWPILPVLIPQRIGTLVTM-QILSFAMVTFVVPTSMALYHFCRNNYLV*RIAQEVSVAL 523
           L+ P L V IP+ IGTL+ +  ++ F    F  P+S+   +F    YLV +  Q +   L
Sbjct: 103 LAKPTLQVKIPETIGTLIGLPNLIIFNAPEFEAPSSIC-KNFIDVRYLVSQGEQILRTGL 161

Query: 524 TRP 532
             P
Sbjct: 162 ETP 164


>Z34802-3|CAA84333.1|  354|Caenorhabditis elegans Hypothetical
           protein M88.3 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 31/106 (29%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
 Frame = +1

Query: 157 SPKNF-YKIAVDKETLQFASGLKVV---NNIKGEQELWILTSSFQRVMT-GSISSDRINF 321
           SPKN   ++A D  T Q      +    N    ++ L IL  S  R  + GS+++ +   
Sbjct: 43  SPKNVEMRVAFDAPTQQSTYTYSINWEDNENSDDKYLKILQKSISRSTSIGSLNTIKSTT 102

Query: 322 RIHAEKIPII-LADSPCTNPPKDRHPGYHANIIVRNGHIRGTYKYG 456
            +H    P+  + D PC    K   P    N I R GH   T  YG
Sbjct: 103 VVHDVPPPVTAICDGPC----KKAFPSNLLNTIGRCGHYLCTACYG 144


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,574,883
Number of Sequences: 27780
Number of extensions: 421780
Number of successful extensions: 1071
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1071
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)