Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f02
(811 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 52 7e-08
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 39 0.001
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 33 0.036
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 33 0.063
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 31 0.15
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 31 0.26
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 29 0.78
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 29 0.78
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 28 1.4
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 28 1.4
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac... 28 1.8
SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomy... 28 1.8
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 27 2.4
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po... 27 2.4
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 3.2
SPBC18H10.10c |cwc16||complexed with Cdc5 protein Cwf16|Schizosa... 27 3.2
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 3.2
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 27 4.2
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 4.2
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 27 4.2
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 27 4.2
SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyc... 27 4.2
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 27 4.2
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 27 4.2
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1... 26 5.5
SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce... 26 5.5
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 26 5.5
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 7.3
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 26 7.3
SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr 1... 26 7.3
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.6
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 25 9.6
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni... 25 9.6
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 52.4 bits (120), Expect = 7e-08
Identities = 22/51 (43%), Positives = 37/51 (72%)
Frame = -2
Query: 621 LVFDEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKK 469
+VFD+ KRK++L GF KRK+ER+K AQ L++ +EE+ +++ +E K+
Sbjct: 27 IVFDKEKRKEYLTGFHKRKVERRKHAQVQLEQQKREERLALRKSLREQRKR 77
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 38.7 bits (86), Expect = 0.001
Identities = 26/89 (29%), Positives = 49/89 (55%)
Frame = -2
Query: 609 EAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQ 430
EAKR++ +KR+ +R K+ QE Q+ L+ +KR KQ+ KE KKL + D E+
Sbjct: 630 EAKRQEE--ARKKREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKKQQQE-ADREK 686
Query: 429 LLKEEYEDDDADVKVKIVELSSDTLQKKD 343
+ +E+ ++ + ++ + L K++
Sbjct: 687 MAREQRLREEEEKRILEERKRREKLDKEE 715
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 33.5 bits (73), Expect = 0.036
Identities = 14/58 (24%), Positives = 35/58 (60%)
Frame = -2
Query: 576 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQLLKEEYEDD 403
RK++L K+K +++ RL++E+K + ++ + +++ + E+ +KE ++DD
Sbjct: 137 RKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQIDAKRKEEEAREKRMKETFKDD 194
Score = 29.5 bits (63), Expect = 0.59
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = -2
Query: 570 RKLERKKKAQEDLQRLLKEEKRRIKQ----ENKESYK-KLVVSSRPLPDIEQLLKEEYED 406
R+L KK+ + + QRL EE+RR K+ E KE + +L+ + + ++ LK+E D
Sbjct: 115 RELLEKKRIEAERQRLKDEEERRKKELMEKEKKEKERIRLIEEQKHKENEQRRLKQEQID 174
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 32.7 bits (71), Expect = 0.063
Identities = 17/35 (48%), Positives = 23/35 (65%)
Frame = -2
Query: 582 GFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKES 478
G RKRK +K QE +R EEKRRI+QE +++
Sbjct: 64 GERKRKFSKKSHLQELYER--SEEKRRIQQEKEDA 96
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 31.5 bits (68), Expect = 0.15
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 2/106 (1%)
Frame = -2
Query: 618 VFDEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPD 439
+F + K +C +K LE+K Q +LLK + E KL P+ D
Sbjct: 28 LFGKLHNKLLICKAKKENLEKKLAYQMMYSKLLKSLPKLSSLEE----NKLTKLKAPIED 83
Query: 438 IEQLLK--EEYEDDDADVKVKIVELSSDTLQKKDLVIGENRPKVLP 307
+E K EE + +++ ++ S+TL L + KV P
Sbjct: 84 MENTKKELEEIRKQSTETELRYLKSLSNTLSFGTLSLSNEINKVGP 129
>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 871
Score = 30.7 bits (66), Expect = 0.26
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -2
Query: 594 DFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLP 442
+F C +KLE+K K + DL + + ++ + + KLV +PLP
Sbjct: 211 EFTCVRDLKKLEKKVKKRSDLGNKYESTLNSLINKSVKKHNKLVKKHKPLP 261
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.1 bits (62), Expect = 0.78
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Frame = -2
Query: 618 VFDEAKRKDFLCGFRKRKLE----RKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSR 451
+ D + KD LC + RKLE K ++E LQ + K + K+E + +LV SS
Sbjct: 470 LMDRVQNKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQEH-KKEVEALQLQLVNSST 528
Query: 450 PLPDIE 433
L ++
Sbjct: 529 ELESVK 534
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 29.1 bits (62), Expect = 0.78
Identities = 28/99 (28%), Positives = 52/99 (52%), Gaps = 7/99 (7%)
Frame = -2
Query: 618 VFDEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQ-ENKESYKKL-----VVS 457
V D +RKD RKR +RKK+ E+ + EE R+K + KE +KL +
Sbjct: 361 VADSLRRKD---DSRKRARDRKKERLEEASQKRLEEVNRLKNLKRKELEEKLNQVIEIAG 417
Query: 456 SRPLPDIEQL-LKEEYEDDDADVKVKIVELSSDTLQKKD 343
S+ + D+ +L L E+++ + + K+ E+ ++ ++D
Sbjct: 418 SKNI-DVSKLDLDEDFDPEKWESKMS--EIFNENYYEED 453
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 28.3 bits (60), Expect = 1.4
Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 11/72 (15%)
Frame = -2
Query: 534 LQRLLKEEKRRIKQENK--------ESYKKLVVSSRPLPDIEQLLKE--EYEDDDADVKV 385
+Q + K++K +++QENK ESYKKL + L D L++ EY + + V
Sbjct: 67 IQSMKKQQKDKLQQENKDQELKNIEESYKKLEEKTEHLSDDNVSLEKRVEYLETENTKLV 126
Query: 384 KIV-ELSSDTLQ 352
K + L+S+ LQ
Sbjct: 127 KTLNSLNSEFLQ 138
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 28.3 bits (60), Expect = 1.4
Identities = 14/44 (31%), Positives = 25/44 (56%)
Frame = -2
Query: 612 DEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKE 481
+E K++D + E++KK Q++ R +E K+R K + KE
Sbjct: 323 EEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRKDQKKE 366
>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
Cut14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1172
Score = 27.9 bits (59), Expect = 1.8
Identities = 24/92 (26%), Positives = 41/92 (44%)
Frame = -2
Query: 624 TLVFDEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPL 445
T +F+E K K F R ++RK+ E++ LL+EE + + K +
Sbjct: 171 TRMFEERKEKAF------RTMQRKEAKVEEINTLLREEIEPRLTKLRTEKKTFLEYQHIY 224
Query: 444 PDIEQLLKEEYEDDDADVKVKIVELSSDTLQK 349
D+E+L D + +K+ EL+ QK
Sbjct: 225 NDLERLSHLCTAYDYYKLSLKVEELTVQASQK 256
>SPAC1142.01 ||SPAC17G6.18|DUF654 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 667
Score = 27.9 bits (59), Expect = 1.8
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -3
Query: 83 QNKKKSQQKKRHMTGKSD 30
+ KKK QQKK+ +TGK D
Sbjct: 99 KKKKKKQQKKKKVTGKRD 116
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 27.5 bits (58), Expect = 2.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = -2
Query: 612 DEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQ-ENKESYK 472
D KDF +R + E+KKKA DL + +K+RI+Q + K +K
Sbjct: 208 DTGIHKDF---YRFQLREKKKKALLDLAHKFEFDKQRIQQLKEKRQFK 252
>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 474
Score = 27.5 bits (58), Expect = 2.4
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 576 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKK 469
+KRK + ED + KEEKRR K+ KE +K
Sbjct: 426 KKRKSVESSEKDED-EAAKKEEKRRKKEAKKEKKEK 460
>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 3.2
Identities = 10/35 (28%), Positives = 24/35 (68%)
Frame = -2
Query: 573 KRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKK 469
KR+ +KKK +++ + LK++ +R+K ++ + K+
Sbjct: 140 KREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKR 174
>SPBC18H10.10c |cwc16||complexed with Cdc5 protein
Cwf16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -2
Query: 531 QRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQLLKEEYEDDDA 397
QRL K+ + R K E K+ K L + +R DI+ L + D A
Sbjct: 158 QRLRKQFRERKKIEKKQEAKDLSLKNRAALDIDILPPSSSDKDKA 202
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 27.1 bits (57), Expect = 3.2
Identities = 16/60 (26%), Positives = 30/60 (50%)
Frame = -2
Query: 540 EDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQLLKEEYEDDDADVKVKIVELSSD 361
E L LL EEK +K+ + E +++ + L D+E K + E + K+K+ + +
Sbjct: 1551 EQLNNLLAEEKSAVKRLSTEKESEILQFNSRLADLE-YHKSQVESELGRSKLKLASTTEE 1609
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -2
Query: 612 DEAKRKDFLCGFRKRKLERKKKAQE--DLQRLLKEEKRRIKQENKESYKK 469
DE + + F+ K ++ KA E D + L K +K+ K+E +YKK
Sbjct: 685 DEIRSRPARTWFQSEKDKQASKASEAKDKKSLAKRKKQMEKEEVPRAYKK 734
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = -2
Query: 468 LVVSSRPLPDIEQLLKEEYEDDDADVKVKIVELS 367
+++ R +PD+ ++ + + D+ +VK +I+ELS
Sbjct: 468 ILIIPRLVPDVLRIAVKTFADETLEVKYQILELS 501
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -2
Query: 606 AKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENK 484
+KRK ++ LE K+ +E+ QR ++EE+ RI +E K
Sbjct: 240 SKRKGPNVTALQKMLEEKRAREEEEQR-IREEEARIAEEEK 279
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 26.6 bits (56), Expect = 4.2
Identities = 16/58 (27%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Frame = -2
Query: 570 RKLERKKKAQEDLQRLLKEEKRRIK--QENKESYKKLVVS-SRPLPDIEQLLKEEYED 406
R+ E+KKK +DL+ L ++ + K + +E+++ V S+ L +E+L + + E+
Sbjct: 162 REDEKKKKEIQDLKELYEKSEHGAKNWERERETFQNQVSQMSKQLDSLEKLCERKDEE 219
>SPCC188.07 |ccq1||telomere maintenence protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 735
Score = 26.6 bits (56), Expect = 4.2
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)
Frame = -2
Query: 603 KRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIK--QE--NKESYKKLVVSSRPLPDI 436
K+ + L K+E +++L L K+++ K QE N++ KL+ ++ +
Sbjct: 577 KKNEDLSKLEVEKVEEIANLKKELTHLAKQQEFGFKYVQEFSNEDLQGKLIEANEKNYKL 636
Query: 435 EQLLKEEYEDDD 400
QLLK + ED D
Sbjct: 637 TQLLKTQKEDAD 648
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/80 (22%), Positives = 34/80 (42%)
Frame = -2
Query: 564 LERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQLLKEEYEDDDADVKV 385
L +KKK + + K K+ I+ + +S+ PDI+++ + E D + D
Sbjct: 213 LSKKKKKRNRKNQKKKSTKQNIEATTENDALSESIST---PDIQKVAQSEDVDAEQDTVA 269
Query: 384 KIVELSSDTLQKKDLVIGEN 325
E + DL++ N
Sbjct: 270 DSKEEERRDIANDDLIVNAN 289
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -2
Query: 558 RKKKAQ--EDLQRLLKEEKRRIKQENKESYKKL 466
RK KA +D+ + KEE ++ Q+N+E Y ++
Sbjct: 423 RKGKAVFLDDIMEVAKEEMHKVMQKNEEKYAQV 455
>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 588
Score = 26.2 bits (55), Expect = 5.5
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = -2
Query: 612 DEAKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKE 481
DEA K+FL G R L+ + ++ +L+ ++ + ++N+E
Sbjct: 484 DEAGLKEFLLGVIDRHLKEYDSCRVRMEHVLQLDQGYLSRDNRE 527
>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = -2
Query: 573 KRKLERKKKAQEDLQRLLKEEKRRIKQENKESY--KKLVVSSRPLPDIEQLLKEEYE 409
K +L + KK DLQ L R KQ+ S KK ++ S + + E+ KE E
Sbjct: 116 KEELHQIKKFSSDLQSLKSSMGERQKQQAAMSRRGKKSIIHSAIIQEKERYEKESQE 172
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -3
Query: 89 RVQNKKKSQQKKRHMTGKSDPRKAKGKKK 3
R +N KK ++ K+ GK+ +K KKK
Sbjct: 205 REENLKKRRESKKSKKGKAPKKKKPSKKK 233
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = -2
Query: 474 KKLVVSSRPLPDIEQLLKEEYEDDDADVKVKIVELSSDTLQKKDL 340
K+LV + P P +L KE+Y+D ++K S+ +++K ++
Sbjct: 233 KRLVETETPPPSSSKL-KEDYKDSKREMKRSNTPWSNASIKKNEV 276
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 25.8 bits (54), Expect = 7.3
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = -2
Query: 555 KKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQLLKEEYEDDDADVKVKI 379
+K+ Q +R K+ + +K+ ++E+Y KL+ ++ L + ++ D VK+
Sbjct: 308 EKEEQRRAERNAKQRLQALKENDEEAYLKLIDQAKDTRITHLLRQTDHYLDSLAAAVKV 366
>SPAC22E12.07 |rna1||Ran GAP Rna1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = -2
Query: 447 LPDIEQLLKEEYEDDDADVKVKIVELSSDTLQKKDLVIGENRPK 316
L D+E+L EE ED++ + + + E + +K+D + + K
Sbjct: 340 LDDMEELTDEEEEDEEEEAESQSPEPETSEEEKEDKELADELSK 383
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.6
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Frame = -2
Query: 546 AQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQLLKE---EYEDD-DADVKVKI 379
++ED + L+++ R+ K++ +E + + PDI++ + E ED D +K+
Sbjct: 4033 SKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDHLDLPEDLKL 4092
Query: 378 VELSSDTLQKKDL 340
E D + DL
Sbjct: 4093 DEKEGDVSKDSDL 4105
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 25.4 bits (53), Expect = 9.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 465 VVSSRPLPDIEQLLKEEYEDDDADVKVKIVELSSDT 358
+ S PLP+ EQL+ E D+ D +I E + +T
Sbjct: 329 LAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEET 364
>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.6
Identities = 25/88 (28%), Positives = 37/88 (42%)
Frame = -2
Query: 606 AKRKDFLCGFRKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQL 427
A+ + FL KR + K ++QE+ E K+E K L S L D+ L
Sbjct: 14 ARPRPFLPLVGKRFVTEKSQSQEEKDTSKITENA--KEEVKRDTSSLAKESLKLLDLNGL 71
Query: 426 LKEEYEDDDADVKVKIVELSSDTLQKKD 343
E Y D K E +S T+ K++
Sbjct: 72 NDESYTGDPG----KGPEYTSSTMLKRE 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,169,288
Number of Sequences: 5004
Number of extensions: 30555
Number of successful extensions: 210
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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