Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f02
         (811 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative TPR-conta...    29   0.13 
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   0.68 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   4.8  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           24   6.4  
AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein p...    24   6.4  

>AJ439353-3|CAD27925.1| 1200|Anopheles gambiae putative
           TPR-containing phosphoprotein protein.
          Length = 1200

 Score = 29.5 bits (63), Expect = 0.13
 Identities = 14/50 (28%), Positives = 29/50 (58%)
 Frame = -2

Query: 579 FRKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQ 430
           F++R+ E +++  E+++R   EE    +QE KE  K  +  + P P+ ++
Sbjct: 851 FKRRQAEDRRR-MEEMRRKAHEEMLLKRQEYKEKTKNALFFAEPAPEAKK 899



 Score = 24.6 bits (51), Expect = 3.7
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
 Frame = -2

Query: 576 RKRKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQLLK-EEYED 406
           R RK++ ++++    Q L +EE +R + E++   +++    R     E LLK +EY++
Sbjct: 829 RARKIDEEERSLRQKQELEREEFKRRQAEDRRRMEEM----RRKAHEEMLLKRQEYKE 882


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.1 bits (57), Expect = 0.68
 Identities = 12/64 (18%), Positives = 36/64 (56%)
 Frame = -2

Query: 570  RKLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLPDIEQLLKEEYEDDDADV 391
            RKL++ + +++ + R + ++   + +  +E YK+++   + + D ++ ++    D D + 
Sbjct: 965  RKLKKLQDSKDKMSRNVNQKAMVLLEREEEQYKEVMRRKKVVEDDKKKIQAIITDLDEEK 1024

Query: 390  KVKI 379
            K K+
Sbjct: 1025 KKKL 1028


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 522 LKEEKRRIKQENKESY 475
           L +E RR+ QENKE++
Sbjct: 800 LNDEIRRLNQENKEAF 815


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = -2

Query: 567  KLERKKKAQEDLQRLLKEEKRRIKQENKESYKKLVVSSRPLP 442
            +++++ + +ED +R   EE+R++  E   +Y++    S+P P
Sbjct: 1094 EIQQQLQREEDERRT--EERRQLHNEANRAYRQRNRRSQPTP 1133


>AB090816-1|BAC57907.1|  455|Anopheles gambiae gag-like protein
           protein.
          Length = 455

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 15/54 (27%), Positives = 29/54 (53%), Gaps = 10/54 (18%)
 Frame = -2

Query: 561 ERKKKAQEDLQRLLKEEKRR----------IKQENKESYKKLVVSSRPLPDIEQ 430
           E+ ++ +ED QR  +E +RR          ++ E +E++  L+  S  L D++Q
Sbjct: 68  EKLREQREDAQRREEEARRREEAAKADNEKLRVEQQETHTTLIAISAQLRDLQQ 121


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 493,092
Number of Sequences: 2352
Number of extensions: 6387
Number of successful extensions: 16
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85655418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)