Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f01
         (805 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY075327-1|AAL68194.1|  204|Drosophila melanogaster GH10845p pro...   140   2e-33
AE014298-1527|AAF47979.1|  592|Drosophila melanogaster CG2145-PA...   140   2e-33
BT001644-1|AAN71399.1|  322|Drosophila melanogaster RE41114p pro...   132   7e-31
AY051910-1|AAK93334.1|  322|Drosophila melanogaster LD39912p pro...   132   7e-31
AE014297-2108|AAF55248.2|  322|Drosophila melanogaster CG3303-PA...   132   7e-31
AY051690-1|AAK93114.1|  475|Drosophila melanogaster LD23804p pro...    32   1.1  
AE014297-4531|AAF57004.1|  475|Drosophila melanogaster CG7946-PA...    32   1.1  
L31886-1|AAB04161.1|  597|Drosophila melanogaster Star protein.        31   1.4  
AY113201-1|AAM29206.1|  597|Drosophila melanogaster AT04225p pro...    31   1.4  
AE014134-192|AAN10478.1|  597|Drosophila melanogaster CG4385-PB,...    31   1.4  
AE014134-191|AAF51425.1|  597|Drosophila melanogaster CG4385-PA,...    31   1.4  
AE014297-1921|AAF55115.1|  201|Drosophila melanogaster CG7026-PA...    29   7.4  

>AY075327-1|AAL68194.1|  204|Drosophila melanogaster GH10845p
           protein.
          Length = 204

 Score =  140 bits (339), Expect = 2e-33
 Identities = 74/202 (36%), Positives = 116/202 (57%), Gaps = 1/202 (0%)
 Frame = -3

Query: 803 DNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVELLR 624
           +NY  +    E VTPNE  E+  +++ ++AT  +R  + FL  KG+   +    + +L++
Sbjct: 6   NNYEHDTHVNEHVTPNERKEENDFLDAVMATPVMRQAMLFLQQKGVVSPDPKTHR-DLVK 64

Query: 623 KIWFTKYARHWTGLCKC-SCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYID 447
           ++WFT+Y+R   G  K  S  FE+VF+ E+K   ++G H+W++    E D + +Y GY+ 
Sbjct: 65  ELWFTQYSR---GQGKIGSSGFEHVFVYEVKDGTIIGFHNWVYIGDEEKDGRFDYKGYMK 121

Query: 446 KLDLSGKGLILKQHSVLSETKDAPEVNMFVGTSPELETALYTLCFMTRPDRPCRLRFNNI 267
           + D+  KG I+K      +  + P   +FVGTSPELE ALYT+CF  RPDR C +   N 
Sbjct: 122 EQDIGTKGKIVKIR-FSHQGLNKPVNTVFVGTSPELELALYTVCFQLRPDRTCPVSLGNS 180

Query: 266 PFTIQTKSIKVENLPVIDTAYP 201
            F I T S +     +I +AYP
Sbjct: 181 KFGIVTYSWRYRGKNLIGSAYP 202


>AE014298-1527|AAF47979.1|  592|Drosophila melanogaster CG2145-PA
           protein.
          Length = 592

 Score =  140 bits (339), Expect = 2e-33
 Identities = 74/202 (36%), Positives = 116/202 (57%), Gaps = 1/202 (0%)
 Frame = -3

Query: 803 DNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVELLR 624
           +NY  +    E VTPNE  E+  +++ ++AT  +R  + FL  KG+   +    + +L++
Sbjct: 394 NNYEHDTHVNEHVTPNERKEENDFLDAVMATPVMRQAMLFLQQKGVVSPDPKTHR-DLVK 452

Query: 623 KIWFTKYARHWTGLCKC-SCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYID 447
           ++WFT+Y+R   G  K  S  FE+VF+ E+K   ++G H+W++    E D + +Y GY+ 
Sbjct: 453 ELWFTQYSR---GQGKIGSSGFEHVFVYEVKDGTIIGFHNWVYIGDEEKDGRFDYKGYMK 509

Query: 446 KLDLSGKGLILKQHSVLSETKDAPEVNMFVGTSPELETALYTLCFMTRPDRPCRLRFNNI 267
           + D+  KG I+K      +  + P   +FVGTSPELE ALYT+CF  RPDR C +   N 
Sbjct: 510 EQDIGTKGKIVKIR-FSHQGLNKPVNTVFVGTSPELELALYTVCFQLRPDRTCPVSLGNS 568

Query: 266 PFTIQTKSIKVENLPVIDTAYP 201
            F I T S +     +I +AYP
Sbjct: 569 KFGIVTYSWRYRGKNLIGSAYP 590


>BT001644-1|AAN71399.1|  322|Drosophila melanogaster RE41114p
           protein.
          Length = 322

 Score =  132 bits (318), Expect = 7e-31
 Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
 Frame = -3

Query: 803 DNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVELLR 624
           DNY  +V   E  TP    EQ  ++  ++ T  ++  + FLV+K I  + EY +Q+ LL+
Sbjct: 121 DNYELDVAVQEHPTPEHVQEQYDFLRAVMGTRVMKLTMRFLVHKDIVSV-EYDDQLRLLQ 179

Query: 623 KIWFTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDK 444
           ++WFT Y+R   G+   S +FE+VFMAE++  +VLGLH+WL+FA +E     +Y G+++ 
Sbjct: 180 ELWFTPYSRG-RGIVGSS-SFEHVFMAEIRDQKVLGLHNWLYFADQEQRGNVDYKGWLNH 237

Query: 443 LDLSGKGLILKQHSVLSETKDAPEVNMFVGTSPELETALYTLCFM-TRPDRPCRLRFNNI 267
            ++     ++          + P    FVG SPEL+ ALYT CF+ T  + PC ++  + 
Sbjct: 238 KEMGKHNQMVLSVRYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEEPCHIQLGHA 297

Query: 266 PFTIQTKSIKVENLPVIDTAYP 201
             TI +   K   + +I T YP
Sbjct: 298 SATIVSHEWKWNGMRLIGTVYP 319


>AY051910-1|AAK93334.1|  322|Drosophila melanogaster LD39912p
           protein.
          Length = 322

 Score =  132 bits (318), Expect = 7e-31
 Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
 Frame = -3

Query: 803 DNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVELLR 624
           DNY  +V   E  TP    EQ  ++  ++ T  ++  + FLV+K I  + EY +Q+ LL+
Sbjct: 121 DNYELDVAVQEHPTPEHVQEQYDFLRAVMGTRVMKLTMRFLVHKDIVSV-EYDDQLRLLQ 179

Query: 623 KIWFTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDK 444
           ++WFT Y+R   G+   S +FE+VFMAE++  +VLGLH+WL+FA +E     +Y G+++ 
Sbjct: 180 ELWFTPYSRG-RGIVGSS-SFEHVFMAEIRDQKVLGLHNWLYFADQEQRGNVDYKGWLNH 237

Query: 443 LDLSGKGLILKQHSVLSETKDAPEVNMFVGTSPELETALYTLCFM-TRPDRPCRLRFNNI 267
            ++     ++          + P    FVG SPEL+ ALYT CF+ T  + PC ++  + 
Sbjct: 238 KEMGKHNQMVLSVRYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEEPCHIQLGHA 297

Query: 266 PFTIQTKSIKVENLPVIDTAYP 201
             TI +   K   + +I T YP
Sbjct: 298 SATIVSHEWKWNGMRLIGTVYP 319


>AE014297-2108|AAF55248.2|  322|Drosophila melanogaster CG3303-PA
           protein.
          Length = 322

 Score =  132 bits (318), Expect = 7e-31
 Identities = 70/202 (34%), Positives = 113/202 (55%), Gaps = 1/202 (0%)
 Frame = -3

Query: 803 DNYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVELLR 624
           DNY  +V   E  TP    EQ  ++  ++ T  ++  + FLV+K I  + EY +Q+ LL+
Sbjct: 121 DNYELDVAVQEHPTPEHVQEQYDFLRAVMGTRVMKLTMRFLVHKDIVSV-EYDDQLRLLQ 179

Query: 623 KIWFTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDK 444
           ++WFT Y+R   G+   S +FE+VFMAE++  +VLGLH+WL+FA +E     +Y G+++ 
Sbjct: 180 ELWFTPYSRG-RGIVGSS-SFEHVFMAEIRDQKVLGLHNWLYFADQEQRGNVDYKGWLNH 237

Query: 443 LDLSGKGLILKQHSVLSETKDAPEVNMFVGTSPELETALYTLCFM-TRPDRPCRLRFNNI 267
            ++     ++          + P    FVG SPEL+ ALYT CF+ T  + PC ++  + 
Sbjct: 238 KEMGKHNQMVLSVRYTFHNINKPVNGFFVGISPELDMALYTACFLATAKEEPCHIQLGHA 297

Query: 266 PFTIQTKSIKVENLPVIDTAYP 201
             TI +   K   + +I T YP
Sbjct: 298 SATIVSHEWKWNGMRLIGTVYP 319


>AY051690-1|AAK93114.1|  475|Drosophila melanogaster LD23804p
           protein.
          Length = 475

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = -1

Query: 358 LAPPPNWRPLCTRSVS*PARTDLADCASTTYPSLSKQNRSKSKTYRSLTPLTQLGKKI 185
           LAPPP  R + T  ++  A    A  A+T  P+ SK++  KSK   ++TP+ +  + +
Sbjct: 166 LAPPPAKRRVPTEGLATAAAIPAAPAAAT--PTSSKKSVKKSKPTAAVTPIQKRSRPV 221


>AE014297-4531|AAF57004.1|  475|Drosophila melanogaster CG7946-PA
           protein.
          Length = 475

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 19/58 (32%), Positives = 32/58 (55%)
 Frame = -1

Query: 358 LAPPPNWRPLCTRSVS*PARTDLADCASTTYPSLSKQNRSKSKTYRSLTPLTQLGKKI 185
           LAPPP  R + T  ++  A    A  A+T  P+ SK++  KSK   ++TP+ +  + +
Sbjct: 166 LAPPPAKRRVPTEGLATAAAIPAAPAAAT--PTSSKKSVKKSKPTAAVTPIQKRSRPV 221


>L31886-1|AAB04161.1|  597|Drosophila melanogaster Star protein.
          Length = 597

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 558 LEGATAFAKAGPVACVLREPNLSQQLNLFGILIQ 659
           + GA   + +GP+A ++  P LS+QLN  G+L++
Sbjct: 400 MNGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVE 433


>AY113201-1|AAM29206.1|  597|Drosophila melanogaster AT04225p
           protein.
          Length = 597

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 558 LEGATAFAKAGPVACVLREPNLSQQLNLFGILIQ 659
           + GA   + +GP+A ++  P LS+QLN  G+L++
Sbjct: 400 MNGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVE 433


>AE014134-192|AAN10478.1|  597|Drosophila melanogaster CG4385-PB,
           isoform B protein.
          Length = 597

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 558 LEGATAFAKAGPVACVLREPNLSQQLNLFGILIQ 659
           + GA   + +GP+A ++  P LS+QLN  G+L++
Sbjct: 400 MNGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVE 433


>AE014134-191|AAF51425.1|  597|Drosophila melanogaster CG4385-PA,
           isoform A protein.
          Length = 597

 Score = 31.5 bits (68), Expect = 1.4
 Identities = 13/34 (38%), Positives = 23/34 (67%)
 Frame = +3

Query: 558 LEGATAFAKAGPVACVLREPNLSQQLNLFGILIQ 659
           + GA   + +GP+A ++  P LS+QLN  G+L++
Sbjct: 400 MNGAVIQSLSGPLAHLITAPWLSEQLNWMGVLVE 433


>AE014297-1921|AAF55115.1|  201|Drosophila melanogaster CG7026-PA
           protein.
          Length = 201

 Score = 29.1 bits (62), Expect = 7.4
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +1

Query: 295 LSGRVMKQSVYRAVSSSGEVPTNMFTSGASF 387
           LSG V K S  R ++ S  + TNMFT  A+F
Sbjct: 104 LSGNVNKFSSVRLITDSTVMATNMFTGFATF 134


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,083,017
Number of Sequences: 53049
Number of extensions: 739438
Number of successful extensions: 2088
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2066
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3757402116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)