Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13f01
(805 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75544-4|CAA99880.1| 307|Caenorhabditis elegans Hypothetical pr... 83 2e-16
U39995-3|AAF99995.2| 572|Caenorhabditis elegans Hypothetical pr... 58 6e-09
U49830-12|AAL16311.1| 363|Caenorhabditis elegans Hypothetical p... 30 2.2
U58749-9|AAK18874.1| 349|Caenorhabditis elegans Hypothetical pr... 29 2.9
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 29 2.9
Z30973-1|CAA83223.1| 424|Caenorhabditis elegans Hypothetical pr... 29 3.9
AL032657-7|CAA21740.1| 340|Caenorhabditis elegans Hypothetical ... 29 3.9
U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical p... 29 5.1
L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical p... 29 5.1
Z92827-5|CAB07325.1| 732|Caenorhabditis elegans Hypothetical pr... 28 9.0
Z81139-6|CAH60791.2| 358|Caenorhabditis elegans Hypothetical pr... 28 9.0
L14331-7|AAN65310.1| 510|Caenorhabditis elegans Hypothetical pr... 28 9.0
L14331-6|AAN65311.1| 473|Caenorhabditis elegans Hypothetical pr... 28 9.0
>Z75544-4|CAA99880.1| 307|Caenorhabditis elegans Hypothetical
protein K02A11.3 protein.
Length = 307
Score = 83.0 bits (196), Expect = 2e-16
Identities = 59/212 (27%), Positives = 106/212 (50%), Gaps = 10/212 (4%)
Frame = -3
Query: 803 DNYHKN--VIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYPEQVEL 630
DN+++ VI P E+ E +++ +L + P++ L + KG + P+
Sbjct: 93 DNFNRQTGVIEPRVSQAEEKNEVGKFLDYVLESRPMQELYNWFKAKG-HPIATSPQVFRF 151
Query: 629 -LRKIWFTKYARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLFFAKRELDHKANYLGY 453
+ ++WF+ Y+R G S FE+VF+ E K+ E+ G+H+W+ F E + N+
Sbjct: 152 WIGQLWFSHYSRA-LGRPDTS-GFEHVFIGEAKNGEISGMHNWVRFYVLENNRTENF--- 206
Query: 452 IDKLDLSGKGLILKQHSVLSETKDAPEV------NMFVGTSPELETALYTLCFMTRPDR- 294
KG +K+ ++++ K + ++ +GTSPE + ALYT+CF++R R
Sbjct: 207 ------DYKGFTVKRFNIMAALKFTWDGLLKRAGSILIGTSPEFDMALYTMCFLSRRGRE 260
Query: 293 PCRLRFNNIPFTIQTKSIKVENLPVIDTAYPT 198
C + F+ P I + I +N I + YPT
Sbjct: 261 TCDVEFDGCPLQITSFEIMQQNKVYIGSIYPT 292
>U39995-3|AAF99995.2| 572|Caenorhabditis elegans Hypothetical
protein M60.2 protein.
Length = 572
Score = 58.4 bits (135), Expect = 6e-09
Identities = 44/174 (25%), Positives = 80/174 (45%)
Frame = -3
Query: 734 YINTILATGPIRSLITFLVNKGITQLNEYPEQVELLRKIWFTKYARHWTGLCKCSCAFEN 555
+++ +A+ ++ TFL +G++ + + +L +WF YAR+ SC F++
Sbjct: 115 FLDNFIASDAVKQAWTFLQAQGVSTSDPIDFRQQLYN-LWFLPYARNQA---LGSCGFKS 170
Query: 554 VFMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDAP 375
VF+ E V +W+ F +E K NY G+ KL+ G+ + V +D
Sbjct: 171 VFVGEATGTVVNRFANWVGFYIQENAGKFNYHGWFTKLN----GIAIDLQFVAGSDEDL- 225
Query: 374 EVNMFVGTSPELETALYTLCFMTRPDRPCRLRFNNIPFTIQTKSIKVENLPVID 213
E + + +SP E A YT+ +T ++ I IQ ++ V V+D
Sbjct: 226 ETSFLLNSSPTFEFAAYTVAALTNTQPSILIQGEEI--DIQAPTLSVNKATVLD 277
Score = 53.6 bits (123), Expect = 2e-07
Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 2/160 (1%)
Frame = -3
Query: 728 NTILATGPIRSLITFLVNKGITQLNEYPE-QVELLRKIWFTKYARHWTGLCKCSCAFENV 552
NT AT S +L + + + + ++L +WF Y R L S +E+V
Sbjct: 399 NTFTATPMFASAFAYLQSINYKETSNLTNFKTKVLWPLWFGTYTRCKGPLG--SSGWEHV 456
Query: 551 FMAELKSNEVLGLHSWLFFAKRELDHKANYLGYIDKLDLSGKGLILKQHSVLSETKDAPE 372
F E+KSNEV G H W+ + + K Y GY + K + L P+
Sbjct: 457 FSGEIKSNEVDGQHDWVRYYTEQKADKMVYDGYYTHDENLIGTFQYKWNGALK-----PK 511
Query: 371 VNMFVGTSPELETALYTLCFMTRPD-RPCRLRFNNIPFTI 255
F GTSP + ++ ++C + + C + N P T+
Sbjct: 512 GGFFTGTSPAFDFSILSVCALAHGNGGNCHFKVTNYPITV 551
>U49830-12|AAL16311.1| 363|Caenorhabditis elegans Hypothetical
protein C33F10.13 protein.
Length = 363
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -1
Query: 268 YPSLSKQNRSKSKTYRSLTPLTQLGKKIIFKKTN 167
+P L +RS KT R +TPL I KKTN
Sbjct: 7 FPILQLPSRSLQKTLRIMTPLNLFTLSFISKKTN 40
>U58749-9|AAK18874.1| 349|Caenorhabditis elegans Hypothetical
protein B0496.2 protein.
Length = 349
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)
Frame = -3
Query: 668 ITQLNEYPEQVELLRKIWFTK---YARHWTGLCKCSCAFENVFMAELKSNEVLGLHSWLF 498
+T+L + PE E+ +K+ + HWTG SC E F E+ E W F
Sbjct: 6 VTKLFKLPEDSEIGKKVQISICDILGLHWTGFWTISCTAEGRF--EINCEE-KNRSRWKF 62
Query: 497 FAKREL 480
A+ EL
Sbjct: 63 LAQVEL 68
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = -3
Query: 800 NYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLITFLVNKGITQLNEYP 645
+Y + + P F + T T+Y+N I P+ + L + GITQL P
Sbjct: 426 SYVPSAVPPMFSATSAPTPPTSYVNPIPPPAPLNFPMPSLSSIGITQLATPP 477
>Z30973-1|CAA83223.1| 424|Caenorhabditis elegans Hypothetical
protein B0284.2 protein.
Length = 424
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -2
Query: 258 YPNKIDQSRKLTGH*HRLPNLVKK*Y 181
Y N +++++ LTG H LP+LVK Y
Sbjct: 348 YENVLEKNKNLTGKIHGLPSLVKSNY 373
>AL032657-7|CAA21740.1| 340|Caenorhabditis elegans Hypothetical
protein Y47H9C.7 protein.
Length = 340
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -3
Query: 326 YTLC--FMTRPDRPCRLRFNNIPFTIQTKS 243
Y LC FMT PD R N++PF + KS
Sbjct: 261 YKLCPFFMTNPDSLHTFRSNSLPFDLSAKS 290
>U58758-12|AAB93432.1| 392|Caenorhabditis elegans Hypothetical
protein ZK1127.10 protein.
Length = 392
Score = 28.7 bits (61), Expect = 5.1
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -3
Query: 800 NYHKNVIRPEFVTPNEETEQTTYINTILATGPIRSLIT-FLVNKGITQLN 654
N H +V+ +T N+E +Q + LA G + S FLVN+G+ L+
Sbjct: 206 NGHSDVVMGAVITDNDEFQQHLFFMQ-LAVGAVPSPFDCFLVNRGLKTLH 254
>L07144-10|AAK21437.1| 1327|Caenorhabditis elegans Hypothetical
protein R05D3.11 protein.
Length = 1327
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = -3
Query: 362 FVGTSPELETALYTLCFMTRPDRPCRLRFNNIP---FTIQTKSIKVENLPVIDTAYPTW 195
F TSP + TL + PCRL F++ P + ++ N +IDTA W
Sbjct: 279 FTVTSPASAILMLTLIRLREEGHPCRLDFDSNPTDDLLLNFDQVEFSN-NIIDTAVKYW 336
>Z92827-5|CAB07325.1| 732|Caenorhabditis elegans Hypothetical
protein C29F7.6 protein.
Length = 732
Score = 27.9 bits (59), Expect = 9.0
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Frame = -1
Query: 301 RTDLADCASTTYPSLSKQNRS-KSKTYRSLTPLTQLGK-KIIFKKTNKSSLKGRTIVLLL 128
R L + S S SK R KSK +LTP+ + + KII +K K+ L T+ + L
Sbjct: 159 RQILKNLVSAVENSKSKNTRGRKSKIQSNLTPINEKSECKIIKRKNEKTPLLLLTVPMFL 218
>Z81139-6|CAH60791.2| 358|Caenorhabditis elegans Hypothetical
protein W05H5.8 protein.
Length = 358
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = -1
Query: 205 TQLGKKIIFKKTNKSSLKGRTIVLLLYFLQHTFVY 101
T + + I K N SSLKG ++LL FLQ ++Y
Sbjct: 103 TNIWTEDIAKMLNVSSLKGLELMLLSGFLQWYYMY 137
>L14331-7|AAN65310.1| 510|Caenorhabditis elegans Hypothetical
protein K12H4.7a protein.
Length = 510
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 214 SMTGKFSTLIDFVWIVKGMLLKRSLQGLSGRVMKQSVYRAVSSSGEV 354
+MT KF L + W+ G +L + + VY AV SSG V
Sbjct: 168 AMTAKFPQLANAKWVTFGGSYSGALAAWTRAKHPELVYAAVGSSGPV 214
>L14331-6|AAN65311.1| 473|Caenorhabditis elegans Hypothetical
protein K12H4.7b protein.
Length = 473
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/47 (34%), Positives = 22/47 (46%)
Frame = +1
Query: 214 SMTGKFSTLIDFVWIVKGMLLKRSLQGLSGRVMKQSVYRAVSSSGEV 354
+MT KF L + W+ G +L + + VY AV SSG V
Sbjct: 168 AMTAKFPQLANAKWVTFGGSYSGALAAWTRAKHPELVYAAVGSSGPV 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,050,805
Number of Sequences: 27780
Number of extensions: 382623
Number of successful extensions: 1011
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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