Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13f01
         (805 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   3.3  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   3.3  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   3.3  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    23   4.4  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   4.4  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   7.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          22   7.7  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   7.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   7.7  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    22   7.7  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 284 LRFNNIPFTIQTKSIKVENLPVIDTAYPTW 195
           LR+N +P ++   S KV +   +   YP W
Sbjct: 81  LRYNGVPSSLNVISKKVGDGGPLLQPYPDW 110


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 284 LRFNNIPFTIQTKSIKVENLPVIDTAYPTW 195
           LR+N +P ++   S KV +   +   YP W
Sbjct: 81  LRYNGVPSSLNVISKKVGDGGPLLQPYPDW 110


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -3

Query: 284 LRFNNIPFTIQTKSIKVENLPVIDTAYPTW 195
           LR+N +P ++   S KV +   +   YP W
Sbjct: 81  LRYNGVPSSLNVISKKVGDGGPLLQPYPDW 110


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 284 LRFNNIPFTIQTKSIKVENLPVIDTAYPTW 195
           +R+N +P ++   S K  N   +   YP W
Sbjct: 86  IRYNGVPSSLNVVSDKTGNGGRLLQPYPDW 115


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -3

Query: 377 PEVNMFVGTSPELETALYTLCFMTRPDR--PCRLRFNNIPFTIQTK 246
           P +     TSP+ ++ + TL     PDR  P   R  N P  IQ++
Sbjct: 393 PSLYPMATTSPQSQSTIQTLRPQVSPDRTSPMEYRLYN-PALIQSQ 437


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 213 HRLPNLVKK*YLK 175
           HR+P L++K +LK
Sbjct: 328 HRMPQLIRKIFLK 340


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 75  ATYISKPRDYHKRCSKYVNKSNNL 4
           A  I K  +  K C KY   SN+L
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSL 217


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 75  ATYISKPRDYHKRCSKYVNKSNNL 4
           A  I K  +  K C KY   SN+L
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSL 217


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 75  ATYISKPRDYHKRCSKYVNKSNNL 4
           A  I K  +  K C KY   SN+L
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSL 217


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 75  ATYISKPRDYHKRCSKYVNKSNNL 4
           A  I K  +  K C KY   SN+L
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSL 217


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 75  ATYISKPRDYHKRCSKYVNKSNNL 4
           A  I K  +  K C KY   SN+L
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSL 217


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 75  ATYISKPRDYHKRCSKYVNKSNNL 4
           A  I K  +  K C KY   SN+L
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSL 217


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 75  ATYISKPRDYHKRCSKYVNKSNNL 4
           A  I K  +  K C KY   SN+L
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSL 217


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 284 LRFNNIPFTIQTKSIKVENLPVIDTAYPTW 195
           ++FN +P ++   + K  N   +   YP W
Sbjct: 79  MKFNGVPSSLNVITNKTGNGGPLLAPYPDW 108


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 7.7
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -2

Query: 75  ATYISKPRDYHKRCSKYVNKSNNL 4
           A  I K  +  K C KY   SN+L
Sbjct: 194 AVNIEKSENETKTCKKYAISSNSL 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,737
Number of Sequences: 438
Number of extensions: 4645
Number of successful extensions: 18
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25489170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)