Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e24
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0173 + 28140484-28140869,28141079-28141481,28141719-281417...    30   2.1  
01_06_1051 - 34127251-34127510,34128625-34128868                       29   3.6  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    29   4.8  
02_02_0642 + 12585531-12586126,12586292-12586371,12586481-125865...    28   6.3  

>05_07_0173 + 28140484-28140869,28141079-28141481,28141719-28141781,
            28142350-28142535,28144695-28145076,28145689-28145780,
            28145988-28146737,28146969-28147100,28147149-28147247,
            28147977-28148132,28150187-28150317,28150798-28151254,
            28151327-28151668,28152137-28153001,28153112-28153170,
            28153806-28154261,28154835-28154873,28155016-28155201
          Length = 1727

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 9/44 (20%), Positives = 26/44 (59%)
 Frame = -2

Query: 376  PWLNTDATIKQDIFLKWAGVLVSKICEYPGATIQYLSDQCEYLS 245
            PW+N D ++ + ++  ++  ++  + +YPG   ++L  + + L+
Sbjct: 1621 PWINGDGSMNETVYEGFSRRIIGYVMQYPGVVEEHLICRMDVLN 1664


>01_06_1051 - 34127251-34127510,34128625-34128868
          Length = 167

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = -1

Query: 317 FGKQNMRIPGSYNTVSVGSVRVSKLQSGPGCVCLLK*DEMR 195
           F   ++ I  SYN V+ G  R+ ++++G   +C+ K +  R
Sbjct: 80  FAGSSLGIEFSYNRVTTGRSRILQIRAGKAALCMTKRNRSR 120


>12_02_1035 - 25570009-25571241,25571940-25573709,25573797-25575118,
            25575208-25575555,25576540-25576633
          Length = 1588

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/49 (32%), Positives = 28/49 (57%)
 Frame = -2

Query: 544  ELEKINGDTKALIQQLADLESANIIKRIGYNENILISINFIESLTIKID 398
            ELEK++G  KAL + + D       +R+ +N N+L +   I+ L ++ D
Sbjct: 1208 ELEKLHGTIKALQKVVTDTGVVLEQERLDFNANLLDARRQIDLLRLRDD 1256


>02_02_0642 +
           12585531-12586126,12586292-12586371,12586481-12586539,
           12587190-12587462,12587876-12587914,12588086-12588231,
           12589495-12589696
          Length = 464

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -2

Query: 376 PWLNTDATIKQDIFLKWAGVLVSKICEYPG 287
           PWLN+D +I   ++   +  ++  + +YPG
Sbjct: 304 PWLNSDGSINSTVYECLSHRIIGYVMQYPG 333


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,141,573
Number of Sequences: 37544
Number of extensions: 378831
Number of successful extensions: 905
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 905
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)