Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e24
         (704 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF059613-1|AAC25708.1|  893|Drosophila melanogaster transportin ...    32   0.66 
AE014296-1099|AAN12090.1|  893|Drosophila melanogaster CG7398-PC...    32   0.66 
AE014296-1098|AAN12089.1|  893|Drosophila melanogaster CG7398-PB...    32   0.66 
AE014296-1097|AAF50674.1|  893|Drosophila melanogaster CG7398-PA...    32   0.66 
BT003191-1|AAO24946.1|  893|Drosophila melanogaster RE59670p pro...    32   0.87 
AY052002-1|AAK93426.1|  513|Drosophila melanogaster LD46862p pro...    31   1.2  
AE014134-2346|AAF53298.1| 1906|Drosophila melanogaster CG7099-PA...    31   1.2  
BT016160-1|AAV37045.1|  574|Drosophila melanogaster AT09606p pro...    30   2.7  
BT011378-1|AAR96170.1|  279|Drosophila melanogaster LP12677p pro...    29   4.7  

>AF059613-1|AAC25708.1|  893|Drosophila melanogaster transportin
           protein.
          Length = 893

 Score = 32.3 bits (70), Expect = 0.66
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 166 PDLFSDDDVYTESTEYNCYESFNNIIVYPIKNCTCRYAYVRKLSGLII 23
           PD  +   V  +  E+N Y  FNN ++Y +          R LSGLI+
Sbjct: 23  PDTATQMAVQMKLEEFNRYPDFNNYLIYVLTKLKTEDEPTRSLSGLIL 70


>AE014296-1099|AAN12090.1|  893|Drosophila melanogaster CG7398-PC,
           isoform C protein.
          Length = 893

 Score = 32.3 bits (70), Expect = 0.66
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 166 PDLFSDDDVYTESTEYNCYESFNNIIVYPIKNCTCRYAYVRKLSGLII 23
           PD  +   V  +  E+N Y  FNN ++Y +          R LSGLI+
Sbjct: 23  PDTATQMAVQMKLEEFNRYPDFNNYLIYVLTKLKTEDEPTRSLSGLIL 70


>AE014296-1098|AAN12089.1|  893|Drosophila melanogaster CG7398-PB,
           isoform B protein.
          Length = 893

 Score = 32.3 bits (70), Expect = 0.66
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 166 PDLFSDDDVYTESTEYNCYESFNNIIVYPIKNCTCRYAYVRKLSGLII 23
           PD  +   V  +  E+N Y  FNN ++Y +          R LSGLI+
Sbjct: 23  PDTATQMAVQMKLEEFNRYPDFNNYLIYVLTKLKTEDEPTRSLSGLIL 70


>AE014296-1097|AAF50674.1|  893|Drosophila melanogaster CG7398-PA,
           isoform A protein.
          Length = 893

 Score = 32.3 bits (70), Expect = 0.66
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 166 PDLFSDDDVYTESTEYNCYESFNNIIVYPIKNCTCRYAYVRKLSGLII 23
           PD  +   V  +  E+N Y  FNN ++Y +          R LSGLI+
Sbjct: 23  PDTATQMAVQMKLEEFNRYPDFNNYLIYVLTKLKTEDEPTRSLSGLIL 70


>BT003191-1|AAO24946.1|  893|Drosophila melanogaster RE59670p
           protein.
          Length = 893

 Score = 31.9 bits (69), Expect = 0.87
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = -2

Query: 166 PDLFSDDDVYTESTEYNCYESFNNIIVYPIKNCTCRYAYVRKLSGLII 23
           PD  +   V  +  E+N Y  FNN ++Y +          R LSGLI+
Sbjct: 23  PDTATKMAVQMKLEEFNRYPDFNNYLIYVLTKLKTEDEPTRSLSGLIL 70


>AY052002-1|AAK93426.1|  513|Drosophila melanogaster LD46862p
           protein.
          Length = 513

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 382 PTPWLNTDATIKQDIFLKWAGVLVSKICEYPGATIQYLSDQCEYLSCRAVQDVCVFLSKM 203
           P PW+  +A++ + +  +W G ++S+     G T+  L  +  +L    V  +   L  +
Sbjct: 388 PQPWIRVNASLNRRVLDRWLGAVLSECIARVGCTVHSLFLRFLHLVPVDVMFLLELLHDL 447

Query: 202 KCVAL 188
            C+ L
Sbjct: 448 GCIQL 452


>AE014134-2346|AAF53298.1| 1906|Drosophila melanogaster CG7099-PA
            protein.
          Length = 1906

 Score = 31.5 bits (68), Expect = 1.2
 Identities = 15/65 (23%), Positives = 31/65 (47%)
 Frame = -2

Query: 382  PTPWLNTDATIKQDIFLKWAGVLVSKICEYPGATIQYLSDQCEYLSCRAVQDVCVFLSKM 203
            P PW+  +A++ + +  +W G ++S+     G T+  L  +  +L    V  +   L  +
Sbjct: 1781 PQPWIRVNASLNRRVLDRWLGAVLSECIARVGCTVHSLFLRFLHLVPVDVMFLLELLHDL 1840

Query: 202  KCVAL 188
             C+ L
Sbjct: 1841 GCIQL 1845


>BT016160-1|AAV37045.1|  574|Drosophila melanogaster AT09606p
           protein.
          Length = 574

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 9/90 (10%)
 Frame = -2

Query: 247 SCRAVQDVCVFLSKMKCVALSCVKTIEPDLFSDDDVYTESTEYNCYESFNNIIVYP---- 80
           S  + +DVC          L+  KT E      + V+T S++YN       +I       
Sbjct: 28  SIESFEDVCKTFKSKSVQELNAQKTSEVPKSDQEKVHTSSSKYNSTPKTEKLISEADPDS 87

Query: 79  -----IKNCTCRYAYVRKLSGLIIPVKDQT 5
                +K  + RY+  R  SG ++  K QT
Sbjct: 88  EYTRFLKQMSVRYSEFRIASGQVVQQKGQT 117


>BT011378-1|AAR96170.1|  279|Drosophila melanogaster LP12677p
           protein.
          Length = 279

 Score = 29.5 bits (63), Expect = 4.7
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 328 WAGVLVSKICEYPGATIQYLSDQCEYLSCRAVQD 227
           W  +L S +  +P AT Q+L   C Y+S  A+Q+
Sbjct: 5   WILLLTSLLPWHPHATAQFLEPDCGYMSPEALQN 38


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,569,582
Number of Sequences: 53049
Number of extensions: 694747
Number of successful extensions: 2008
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1961
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2007
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3108380451
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)