Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e24
         (704 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical pr...    32   0.35 
U52002-7|AAB37730.3|  715|Caenorhabditis elegans Heparan sulphot...    31   0.80 
AB038044-1|BAB62394.1|  852|Caenorhabditis elegans N-deacetylase...    31   0.80 
AB037943-1|BAB61758.1|  696|Caenorhabditis elegans N-deacetylase...    31   0.80 
AB037942-1|BAB61757.1|  814|Caenorhabditis elegans N-deacetylase...    31   0.80 
AB037941-1|BAB61756.1|  826|Caenorhabditis elegans N-deactylase/...    31   0.80 
AC025715-4|AAP13754.1|  301|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z81052-2|CAB02875.1|  244|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical...    28   5.7  
AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormo...    28   5.7  
AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine re...    28   7.5  
AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical ...    27   9.9  
AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z92809-1|CAB07270.1|  286|Caenorhabditis elegans Hypothetical
           protein R17.1 protein.
          Length = 286

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 29/116 (25%), Positives = 52/116 (44%)
 Frame = -2

Query: 595 KVLKYIVSKGESGATFYELEKINGDTKALIQQLADLESANIIKRIGYNENILISINFIES 416
           KV +  +S  +  +   E + +N +T        D    N++KR  +N + L+    +  
Sbjct: 94  KVSQLTISSYDYQSIIEEFDSLNIETLHFTSPYMDTFHGNLLKRCSWNFDELL----LSC 149

Query: 415 LTIKIDDKYIIPTPWLNTDATIKQDIFLKWAGVLVSKICEYPGATIQYLSDQCEYL 248
            + ++ D   + T     +  IKQD  +K   +LVS I E    T+  L+D C +L
Sbjct: 150 FSPRVQDFQAV-TCCNFKNIMIKQDESIKLEDLLVSNISEILMHTLLPLTDICLFL 204


>U52002-7|AAB37730.3|  715|Caenorhabditis elegans Heparan
           sulphotransferase protein 1 protein.
          Length = 715

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 558 PDSPFETMYFRTLPSAHGYVCFVLDGIVACLDNS 659
           P+ PFET Y R  PS  G+ C +LDG   CL  S
Sbjct: 634 PEFPFET-YIRYSPSK-GFHCRLLDGKTKCLGES 665


>AB038044-1|BAB62394.1|  852|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 852

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 558 PDSPFETMYFRTLPSAHGYVCFVLDGIVACLDNS 659
           P+ PFET Y R  PS  G+ C +LDG   CL  S
Sbjct: 771 PEFPFET-YIRYSPSK-GFHCRLLDGKTKCLGES 802


>AB037943-1|BAB61758.1|  696|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 696

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 558 PDSPFETMYFRTLPSAHGYVCFVLDGIVACLDNS 659
           P+ PFET Y R  PS  G+ C +LDG   CL  S
Sbjct: 615 PEFPFET-YIRYSPSK-GFHCRLLDGKTKCLGES 646


>AB037942-1|BAB61757.1|  814|Caenorhabditis elegans
           N-deacetylase/N-sulfotransferase protein.
          Length = 814

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 558 PDSPFETMYFRTLPSAHGYVCFVLDGIVACLDNS 659
           P+ PFET Y R  PS  G+ C +LDG   CL  S
Sbjct: 733 PEFPFET-YIRYSPSK-GFHCRLLDGKTKCLGES 764


>AB037941-1|BAB61756.1|  826|Caenorhabditis elegans
           N-deactylase/N-sulfotransferase protein.
          Length = 826

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 17/34 (50%), Positives = 20/34 (58%)
 Frame = +3

Query: 558 PDSPFETMYFRTLPSAHGYVCFVLDGIVACLDNS 659
           P+ PFET Y R  PS  G+ C +LDG   CL  S
Sbjct: 745 PEFPFET-YIRYSPSK-GFHCRLLDGKTKCLGES 776


>AC025715-4|AAP13754.1|  301|Caenorhabditis elegans Hypothetical
           protein Y38F2AR.13 protein.
          Length = 301

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 23/90 (25%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
 Frame = -2

Query: 592 VLKYIVSKGESGATFYEL-EKINGDTKALIQQLADLESANIIKRIGYNENILISINFIES 416
           V   I +  + G T  EL  K+    + + + LADL  A  I   G +E   +   +   
Sbjct: 101 VCHVIKATRQVGITLGELCGKVKIAKEQIAEILADLSGAAQILAAGVDEKRWVMPEYEAC 160

Query: 415 LTIKIDDKYIIPTPWLNTDATIKQDIFLKW 326
             ++I DK   P PW+  +  I   + ++W
Sbjct: 161 WMVRIGDKKWCPRPWIAPEGCISLPV-VRW 189


>Z81052-2|CAB02875.1|  244|Caenorhabditis elegans Hypothetical
           protein D2023.3 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = +2

Query: 371 PGRGYNVFVIYFNSQALYKIYRN*NV-FVVTDAFYDVCRFQIRQLLYECFSVSIN 532
           P R  ++F+++F  +   KI+   N+ F V+ AF     F    +LY CF  S++
Sbjct: 37  PSRSSSLFIVFFPKKQDSKIHAPRNLFFAVSYAFL----FSFLDILYPCFQPSMH 87


>AF100306-10|AAC68926.1|  798|Caenorhabditis elegans Hypothetical
           protein T24C4.7 protein.
          Length = 798

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -2

Query: 184 CVKTIEPDLFSDDDVYTESTEYNCYESFNNIIVYPIKNC 68
           C++T +   + D   +  +  Y C+ SFNN ++ P+ +C
Sbjct: 87  CMRTGKNTEYEDRSTFV-AHRYKCHGSFNNNVMCPLGDC 124


>AF016665-4|AAC71180.1|  347|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 75 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 25/75 (33%), Positives = 40/75 (53%)
 Frame = -2

Query: 658 ELSRQATIPSKTKQTYPCAEGKVLKYIVSKGESGATFYELEKINGDTKALIQQLADLESA 479
           E SRQ  IPS + QTY     K+LK   +  E    FY LE++    K + Q+  ++ S 
Sbjct: 112 EASRQRNIPSNSPQTY-SGYSKILK---THHEDLLQFY-LEEVE---KTMSQKRRNV-SK 162

Query: 478 NIIKRIGYNENILIS 434
           N++    +NE ++I+
Sbjct: 163 NVLLAKSFNELMIIT 177


>AC006673-6|AAF39926.2|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein7 protein.
          Length = 335

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +3

Query: 303 ILLTKTPAHFRNISCFIVASVFN 371
           ILL KTP++F N   F+V+ +F+
Sbjct: 35  ILLFKTPSYFNNYRNFLVSHIFS 57


>AL132853-3|CAB60438.1|  859|Caenorhabditis elegans Hypothetical
           protein Y80D3A.7 protein.
          Length = 859

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -2

Query: 514 ALIQQLADLESANIIKRIGYN-ENILISINFIESLTIKIDDKYIIPTPWLNTD 359
           ALI  L+ + +  ++   G   ++I++S  F+  + I IDD +II   W  TD
Sbjct: 257 ALIPVLSGITTIGMVSATGLAFQSIIVSTLFLV-IAIGIDDIFIILAAWHRTD 308


>AF047655-5|AAC04399.1|  820|Caenorhabditis elegans Hypothetical
           protein C17B7.5 protein.
          Length = 820

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 23/84 (27%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -2

Query: 349 KQDIFLKWAGVLVSKICEYPGATIQYLSDQCEYLSCRAVQDVCVFLSKMKCVA--LSCVK 176
           K+D +L W   +          TI+    + + L  RA  ++C+     KC+A  +S   
Sbjct: 699 KKDTYLNWVFDMTIDGKVVDKLTIKVPGMEQQQLGIRASLEICLIYGYEKCIAIPISGGL 758

Query: 175 TIEPDLFSDDDVYTESTEYNCYES 104
           TIE   FS   ++     Y CYE+
Sbjct: 759 TIEYPQFS---IF--KIAYTCYEN 777


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,712,487
Number of Sequences: 27780
Number of extensions: 380809
Number of successful extensions: 1090
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1090
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)