Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e21
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       27   3.9  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    26   5.1  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.1  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    26   5.1  
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po...    26   6.7  
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S...    25   8.9  

>SPAC8E11.08c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 100

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
 Frame = -2

Query: 490 LPYRGDYRDSFAFFSFN---FMLQCYIVYIPTYLN 395
           LPYR DY + F     N   F+L C+ V I ++ N
Sbjct: 51  LPYRKDYNEKFKGILINPSIFLLGCHHVQICSFPN 85


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 472 SLRGTAVRPPGRSPCYPGTPHRVGT*YTANQVAL 573
           S++  +V PP +S    G P  V T   AN+ AL
Sbjct: 195 SVKSKSVLPPSKSLARTGLPAEVSTQNNANRAAL 228


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 457 AFFSFNFMLQCYIVYIPTYLNIGSINVGIV 368
           AFF F  +LQC  ++ P +L +  I + ++
Sbjct: 158 AFFLFVTLLQCIPLFCPEHLGLSFIPLSVI 187


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/72 (22%), Positives = 36/72 (50%)
 Frame = +2

Query: 293 QLSQLIKLFTQNENTRMFFVVLLTFYYAYID*TNIQISRYIDYITLQHKIETEKCKAISI 472
           +  +++K      ++ M   + L FY+A        + + +D I L+H++ +   KA  +
Sbjct: 353 EAQEIVKTLIYPNDSVMDLSIGLAFYFASQG--RGVLLQNVDDIKLKHQLPSYTIKAKVL 410

Query: 473 VSAVRQSDRLGG 508
           +S +   ++LGG
Sbjct: 411 ISGLGADEQLGG 422


>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 981

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -2

Query: 475 DYRDSFAFFSFNFMLQCYIVYIPTYLNIGSINV 377
           + +D+F+FF FN   +  +VY+P Y  +  + +
Sbjct: 453 EVKDAFSFFIFN---RFVLVYVPAYNGVDPVTL 482


>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
           Sop2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 377

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +1

Query: 592 RLPLLGNCLLTRSGGLNALLSFPTSRRQGAEKEHEHSFSRSIASFPEGLPQRLIXI 759
           RLP    C    SGG    + F  S    A   H+ S + +  S PE  P+ LI +
Sbjct: 192 RLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRALITV 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,412
Number of Sequences: 5004
Number of extensions: 61088
Number of successful extensions: 140
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)