Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e21
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0243 - 1601977-1602834,1602857-1603063                           29   5.3  
11_06_0470 + 23977394-23977503,23977755-23977922,23978724-239793...    28   7.1  
11_05_0045 - 18577329-18578338,18578704-18578917                       28   7.1  
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478...    28   7.1  
01_01_0096 + 737928-739894,740164-740221                               28   9.3  

>02_01_0243 - 1601977-1602834,1602857-1603063
          Length = 354

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 13/34 (38%), Positives = 21/34 (61%)
 Frame = +3

Query: 534 PGRNVIHCKSSCSSTERLTTTATAWKLPSHKVRR 635
           P + V+ C++ C S  R+TT  TA+ + +H  RR
Sbjct: 14  PAKAVLRCRAVCRSWRRITT--TAYFVAAHSRRR 45


>11_06_0470 +
           23977394-23977503,23977755-23977922,23978724-23979367,
           23979584-23979823,23980175-23980296,23980397-23981080
          Length = 655

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +2

Query: 329 ENTRMFFVVLLTFYYAYID*TNIQISRYIDYITLQHKIETEKCKAISIVS 478
           EN R  + VLLT  YAYI   N +IS+  +Y     ++  +  K  S+V+
Sbjct: 67  ENRRAIWRVLLTHPYAYI---NKEISKDFEYTLFHLQVPPKHRKRSSLVN 113


>11_05_0045 - 18577329-18578338,18578704-18578917
          Length = 407

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 723 GGNGTGER-VLVFLLGTLPPRSWETEE 646
           GG+G G R   V  +GT  P SW T+E
Sbjct: 20  GGDGHGHRHAAVLAIGTANPASWVTQE 46


>11_01_0600 -
           4780579-4780839,4781256-4781324,4781535-4781598,
           4781791-4781919,4782234-4782541
          Length = 276

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 527 HLTGSERDTLQIKL--LFHRTSDDDCHCLEIAFSQGPEG*MPSSVSQLRGGRV 679
           H T  + DT Q+      ++ SDD  H  +      P    P   S+L GGRV
Sbjct: 157 HDTDEDHDTSQVSCDSTTYQISDDSYHVSDDTREDSPPFMRPCPTSELAGGRV 209


>01_01_0096 + 737928-739894,740164-740221
          Length = 674

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 26/84 (30%), Positives = 32/84 (38%), Gaps = 3/84 (3%)
 Frame = -3

Query: 753 DQTLXQTFWEGGNGTGERVLVFLLGTLPPRSWETEEGIQP--SGP-CEKAISKQWQSSSD 583
           DQT  Q F++     G  V +  L    P   E   G  P   GP C   I+ Q  S   
Sbjct: 120 DQTSVQDFFDISLTDGFNVPMDFLPVPAP---EQRHGAPPCSKGPRCPANITSQCPSELK 176

Query: 582 VLWKSNLICSVSRSDPVRCPGITG 511
                N  C+V + D   C G TG
Sbjct: 177 APGGCNSACNVFKQDKYCCTGTTG 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,122,155
Number of Sequences: 37544
Number of extensions: 402849
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1056
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)