Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e21
         (761 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1288|AAN12044.1|  923|Drosophila melanogaster CG14837-P...    33   0.32 
AE014296-1693|AAF50239.2| 1937|Drosophila melanogaster CG3280-PA...    30   3.0  
X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein ( Dros...    29   9.2  

>AE014296-1288|AAN12044.1|  923|Drosophila melanogaster CG14837-PB,
           isoform B protein.
          Length = 923

 Score = 33.5 bits (73), Expect = 0.32
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = -3

Query: 555 SVSRSDPVRCPGITGGPPRRSDCRTAETIEIALHFS 448
           S  RS PV CP    G     DCR   + E+ LHFS
Sbjct: 31  SSERSGPVACPVNGNGRDVNGDCRRWSSAELTLHFS 66


>AE014296-1693|AAF50239.2| 1937|Drosophila melanogaster CG3280-PA
           protein.
          Length = 1937

 Score = 30.3 bits (65), Expect = 3.0
 Identities = 17/61 (27%), Positives = 32/61 (52%)
 Frame = +1

Query: 100 LNAWRNW*KKLHI*IYKLNDLIIT*YSLYKINYTFVLSVHFKENKVLC*LKIENSPDTFL 279
           L  + NW  +  + +     +I+   +LY + ++F+  ++ KE K L  LK+EN  +T  
Sbjct: 485 LGLFENWHPRQQLRLQLARIMILNMLNLYSLMFSFIYKINSKE-KPLQMLKLENETNTME 543

Query: 280 L 282
           L
Sbjct: 544 L 544


>X03431-2|CAB57796.1| 1059|Drosophila melanogaster protein (
           Drosophila melanogastertransposable element 297. ).
          Length = 1059

 Score = 28.7 bits (61), Expect = 9.2
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +2

Query: 167 LLDIVYIK*ITHLYFPFILKKTKSYAN*KSKIPQIHFCSPRPQLSQLIKLFTQN 328
           +++  Y K I  L   F+LK   SYA  K  I Q H     P + ++ KLF +N
Sbjct: 726 IVNTTYTKVIRSL---FLLKNVGSYAEFKEIILQSHEKLLHPGIQKMTKLFKEN 776


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,182,267
Number of Sequences: 53049
Number of extensions: 694903
Number of successful extensions: 1954
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1953
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3499501170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)