Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e21
         (761 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical pr...    34   0.096
U55369-2|AAK52183.2|  526|Caenorhabditis elegans Udp-glucuronosy...    29   3.6  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    29   3.6  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    29   3.6  
U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule los...    28   6.3  
AF000266-3|AAC71176.2|  223|Caenorhabditis elegans Hypothetical ...    28   8.3  

>Z83231-3|CAB05751.1|  247|Caenorhabditis elegans Hypothetical
           protein F57G9.3 protein.
          Length = 247

 Score = 34.3 bits (75), Expect = 0.096
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
 Frame = +2

Query: 260 IPQIHFCSP-RPQLSQLIKLFTQNENTRMFFVVLLTFYYAYID*TNIQISRYIDYITLQH 436
           +  IHF SP +    + IKL    + T + F V++ FY+ Y+   NI  + +   I L  
Sbjct: 126 VEMIHFASPIQYTFPKTIKLSNPQKYTILAFSVIMEFYHFYMCCWNISSNLWPINILLCT 185

Query: 437 KIETEKCKAISIVSAVRQSDRLGGPPVIPG 526
            I   +  AI +      SDR     V PG
Sbjct: 186 AINIMEIPAIIVAFYAYNSDRTHFSRVKPG 215


>U55369-2|AAK52183.2|  526|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein48 protein.
          Length = 526

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/49 (24%), Positives = 25/49 (51%)
 Frame = -2

Query: 490 LPYRGDYRDSFAFFSFNFMLQCYIVYIPTYLNIGSINVGIVKS*QNNKK 344
           L Y G + D F F++ + ++    + +  ++ +   N+ I+ S   NKK
Sbjct: 477 LQYEGKHMDFFTFYNLDIIITAASIPVLIFIVLRISNISIITSSPKNKK 525


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 25/95 (26%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
 Frame = +2

Query: 353 VLLTFYYAYID*TNIQISRYIDYITLQHKIETEKCKAIS---IVSAVRQSDRL-----GG 508
           V+LT  +A +     Q S Y+ Y+T++++++TE    ++    V A R  + +     GG
Sbjct: 551 VVLTGRHATV--LEFQSSAYMGYVTVKYEVDTEHEAHVAQDMEVDAPRAGEEVPVGEPGG 608

Query: 509 PPVIPGHLTGSERDTLQIKLLFHRTSDDDCHCLEI 613
            P  PG   G   + L+ + L    +D   +C  I
Sbjct: 609 APGAPGE-PGEPEEALEPEKLLEAHTDPTTNCAMI 642


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +3

Query: 516 LSRDTSPGRNVIHCKSSCSSTERLTTTATAWKLPSHKVRRVECPPQFPN 662
           +S +++   +    +SS  S    TTT T  +  S  VR+++ PP+  N
Sbjct: 300 ISSESTSSDSESESESSTDSETTTTTTTTTTENSSETVRKIDTPPEAEN 348


>U50308-3|AAW88404.1| 1392|Caenorhabditis elegans Gut granule loss
           protein 4 protein.
          Length = 1392

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = +3

Query: 519 SRDTSPGRNVIHCKSSCS 572
           SRDT P +NV++ K++CS
Sbjct: 108 SRDTKPRKNVVNIKTACS 125


>AF000266-3|AAC71176.2|  223|Caenorhabditis elegans Hypothetical
           protein W08F4.7 protein.
          Length = 223

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = -2

Query: 448 SFNFMLQCYIVYIPTYLNIGSINVGIVKS*QNNKKHSGIFILCK 317
           S+N M   + + I + L++G INVG + S +  K  SG +  CK
Sbjct: 64  SYNVMNAFFTLPISSTLSLGLINVGWITS-EALKSQSGFWKTCK 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,695,655
Number of Sequences: 27780
Number of extensions: 359076
Number of successful extensions: 875
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 875
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)