Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e20
         (834 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    28   1.4  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    28   1.4  
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo...    28   1.9  
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac...    27   3.3  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    26   5.7  
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ...    26   7.6  

>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -3

Query: 745 KFATDITMEERKRDSNTGSVYQLAKT--MGIINLKENYSLNN 626
           KF  D+T + R RDS+   +YQL  T     +   +N S+NN
Sbjct: 476 KFIHDVTYDHRLRDSHR-EIYQLQGTGYRPFLRANDNASINN 516


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 17/78 (21%), Positives = 32/78 (41%)
 Frame = +2

Query: 272  FPQNGGKDVRFWRVPVKNGGFCRKRIEVYIQFCNGHVVSERGLAHVIFLMELPV*NGVRV 451
            F     K +  W    +      +RI  + Q   G +     +  +     L    G ++
Sbjct: 770  FFMEAAKGLNKWDAFFRRNSEAERRISFFAQSLGGKIPDAVPVPKMPSFTVLIPHYGEKI 829

Query: 452  TVILRVIVKEQEPVFRVT 505
             + LR I++EQ+P+ R+T
Sbjct: 830  LLSLREIIREQDPMSRIT 847


>SPAC24C9.12c |||glycine hydroxymethyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 27/120 (22%), Positives = 51/120 (42%), Gaps = 6/120 (5%)
 Frame = -3

Query: 466 TKNYSHTYPVLYWKLHQKYNVSKPTLRHDVAVAKLNVDFYPFSTKASVFDRNPPETDVLT 287
           +  YS  YP   +    K+     TL  + A+A  N+D   +         +P    V  
Sbjct: 56  SNKYSEGYPGARYYGGNKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQ 115

Query: 286 AVL--WKTVAAIDKKM--YLTNDFDKIEVQITSYNRCFES--YGVDLDASLICIDLTEYE 125
           A++     +  +D     +L++ +     +I++ +  FES  Y VD +  LI  D+ E++
Sbjct: 116 AIMPPHGRLMGLDLPSGGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHD 175


>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
           Ura3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/33 (33%), Positives = 16/33 (48%)
 Frame = +2

Query: 653 VYDAHCFRELVHGASV*VSFPLLHCYVSGEFYH 751
           +YD    R  +HG    +  PL H + + EF H
Sbjct: 53  IYDMSDVRSFIHGR---IEMPLFHAFTTPEFSH 82


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -3

Query: 460 NYSHTYPVLYWKLHQKYNVSKPTLRHDVAVAKLNVDFYPFSTKASVFDRNPPETDVLTA 284
           +Y   + V   +LH  Y   +     DV   K++  ++P++++ SV    P     L A
Sbjct: 279 DYELMFEVAKLRLHGMYKYPRNYTVSDVLFRKVSRQYWPYTSENSVLANTPQSIISLAA 337


>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 805

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +2

Query: 644 LFEVYDAHCFRELVHGASV*VSFPLLHCYVSGEFYH 751
           + + Y    +RE+ HG    V+FP L   + G+  H
Sbjct: 381 IIDSYGIATYREVNHGIVAIVTFPFLFAIMFGDLGH 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,546
Number of Sequences: 5004
Number of extensions: 82600
Number of successful extensions: 229
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)