Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e20
(834 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_01_0128 + 1932721-1935181,1936099-1936256 32 0.49
07_03_1304 - 25629822-25629839,25630091-25631148,25631784-256349... 32 0.49
05_07_0364 - 29611149-29611211,29611441-29611623,29611796-296118... 32 0.49
06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,608... 31 0.86
07_01_0917 + 7735696-7735896,7735907-7736404,7736481-7736813,773... 30 2.0
05_07_0367 - 29700855-29700920,29701092-29701149,29701446-297015... 30 2.0
09_04_0691 - 19501342-19501779 30 2.6
01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821 30 2.6
06_01_0001 - 18456-18521,18692-18874,19046-19153,19337-19396,197... 29 4.6
05_07_0365 - 29662703-29662710,29664321-29664378,29664675-296647... 29 4.6
06_01_1095 + 8984363-8984789,8985175-8985416,8985500-8985622,898... 29 6.0
05_05_0182 - 23045837-23046026,23046112-23046306,23046852-230470... 29 6.0
>09_01_0128 + 1932721-1935181,1936099-1936256
Length = 872
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 313 SGQKRRLLSKKDRSLHSILQRPRRV*AWACSRYISDG 423
S K+RLL D S SIL + + WAC+ Y+ G
Sbjct: 612 SRAKKRLLLSDDASQESILLQVKNAYEWACAEYVKAG 648
>07_03_1304 -
25629822-25629839,25630091-25631148,25631784-25634928,
25635454-25636293
Length = 1686
Score = 32.3 bits (70), Expect = 0.49
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +1
Query: 217 RFYQNRSSNTFSCLWPLQFSTERR*GRPFLAGSGQKRRLLSKKDRSLHSILQRP 378
RF + N W Q S +R GR G+G+ RL S+ D S+ + Q P
Sbjct: 570 RFVPSSGLNVLKVNWISQSSANQRAGRAGRTGAGRCYRLYSESDFSMMEVHQEP 623
>05_07_0364 - 29611149-29611211,29611441-29611623,29611796-29611853,
29612150-29612207,29612504-29612561,29612859-29612916,
29613214-29613271,29613568-29613625,29613923-29613980,
29614277-29614334,29614631-29614688,29614983-29615040,
29615337-29615394,29615691-29615748,29616045-29616102,
29616400-29616457,29616755-29616812,29617109-29617166,
29617463-29617520,29617817-29617874,29618171-29618228,
29618525-29618582,29618878-29618935,29619233-29619290,
29619942-29619999,29620297-29620376,29620649-29620706,
29621001-29621058,29621353-29621410,29621707-29621764,
29622415-29622472,29622767-29622824,29623121-29623164,
29623475-29623532,29623829-29623886,29624537-29624594,
29624889-29624946,29625243-29625300,29625597-29625654,
29626305-29626400,29626697-29626792,29627797-29627892,
29628188-29628283,29629996-29630053,29630350-29630407,
29630704-29630799,29631096-29631191,29632196-29632253,
29632549-29632644,29633648-29633743,29634040-29634042
Length = 1114
Score = 32.3 bits (70), Expect = 0.49
Identities = 15/43 (34%), Positives = 26/43 (60%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+RS+CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 894 LRSLCCGP-LDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVA 935
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC + +R + ++ ++ LW L++ST R+ R F+A
Sbjct: 350 LRGLCCGP-YDIRRFAETTAASWPMLWTLRYSTFRQNNRCFVA 391
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 662 LRGLCCGP-SDIRRFDETTAASWPMLWTLRYSTFRRNNRYFVA 703
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 604 LRGLCCGP-SDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVA 645
Score = 29.5 bits (63), Expect = 3.5
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 500 LRGLCCGP-SDIRRFAEPTAASWPMLWTLRYSTFRRTNRCFVA 541
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFL 306
+R +CC +R + ++ ++ LW L++ST RR R F+
Sbjct: 720 LRGLCCGP-SDIRRFTETTAASWPMLWTLRYSTFRRNNRCFM 760
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST R+ R F+A
Sbjct: 164 LRGLCCGP-SDIRRFTETTAASWPMLWTLRYSTFRQNNRYFVA 205
>06_01_0004 - 59511-59576,59749-59806,60101-60144,60455-60512,
60810-60867,61165-61222,61871-61928,62225-62282,
62579-62636,62933-62990,63285-63328,63639-63696,
64699-64742,65053-65110,65407-65464,66114-66171,
66468-66818,68051-68108,68405-68462,68759-68816,
69113-69170,69466-69509,69820-70170,71048-71091,
71755-71812,72109-72291,72463-72520,72815-72858,
73877-73920,74584-74641,74938-74995,75292-75349,
75643-75700,75997-76179,76351-76408,76702-76745,
77056-77238,77410-77467,77766-77823,78120-78177,
78473-78530,78826-78869,79180-79362,79534-79591,
79885-79942,80239-80296,80592-80649,80946-81003,
81652-81709,82361-82440,83067-83124,83421-83603,
84127-84184,84480-84537,85188-85245,85541-85598,
85895-85950
Length = 1472
Score = 31.5 bits (68), Expect = 0.86
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 166 SLRHTIRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
S R +R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 1331 SYRPLLRGLCCGP-SDIRRFVETTAASWPMLWTLRYSTFRRNNRCFVA 1377
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 238 LRGLCCGP-SDIRCFAETTAASWPMLWTLRYSTFRRNNRCFVA 279
Score = 28.3 bits (60), Expect = 8.0
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 391 LRGQCCGP-SDIRCFAETTAASWPMLWTLRYSTFRRNNRCFVA 432
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW ++ST RR R F+A
Sbjct: 663 LRGLCCGP-SDIRRFAETTAASWPMLWTFRYSTFRRNNRCFVA 704
>07_01_0917 +
7735696-7735896,7735907-7736404,7736481-7736813,
7736991-7737314,7737367-7737836,7738165-7738447,
7738527-7738640
Length = 740
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/34 (44%), Positives = 19/34 (55%)
Frame = +2
Query: 524 SYNPFNQNYAGET*KGPNPRGVSHYCANVRKSFR 625
S P +QN+ G T P+P G+S N RKS R
Sbjct: 115 SSTPPSQNHLGNTHSSPDPCGMSSMPPNQRKSLR 148
>05_07_0367 -
29700855-29700920,29701092-29701149,29701446-29701503,
29701800-29701857,29702154-29702211,29702508-29702551,
29702840-29703022,29703192-29703249,29703545-29703602,
29703897-29703954,29704250-29704307,29704956-29705013,
29705310-29705367,29705664-29705721,29706348-29706398,
29706695-29706752,29707049-29707106,29707403-29707459,
29707754-29707810,29708085-29708135,29708431-29708507,
29708785-29708842,29709139-29709195,29709490-29709546,
29709821-29709893,29710167-29710224,29710521-29710578,
29710875-29710931,29711558-29711608,29711904-29711980,
29712258-29712315,29712612-29712669,29712966-29713016,
29713667-29713717,29714014-29714057,29714368-29714444,
29714722-29714779,29715076-29715126,29715423-29715480,
29715776-29715833,29716130-29716187,29716484-29716534,
29716831-29716907,29717185-29717242,29717539-29717589,
29718240-29718316,29718594-29718651,29718947-29719004,
29719301-29719351,29719648-29719705,29723277-29723334,
29723631-29723681,29724331-29724388,29724684-29724741,
29725038-29725088,29725385-29725442,29725738-29725814,
29726092-29726148,29726444-29726501,29726798-29726848,
29727070-29727075
Length = 1209
Score = 30.3 bits (65), Expect = 2.0
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 227 LRGLCCGP-SDIRCFAETTAASWPMLWTLRYSTFRRNNRCFVA 268
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 896 LRGLCCGP-SDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVA 937
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 954 LRGLCCGP-SDIRRFTETTAASWPMLWTLRYSTFRRNNRCFVA 995
Score = 29.9 bits (64), Expect = 2.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 1107 LRGLCCGP-SDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVA 1148
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST R R F+A
Sbjct: 539 LRGLCCGP-SDIRRFAETTAASWPMLWTLRYSTFHRINRSFVA 580
>09_04_0691 - 19501342-19501779
Length = 145
Score = 29.9 bits (64), Expect = 2.6
Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 31 RIWCRSPSASQPARPRFYPRSREGRTREQNTLHTPLNRCKSKRHPSL-RHTIR 186
R+W R P + +P+ +R ++R+ + + NR + +RHP L RH R
Sbjct: 66 RVWLRVPCIHRNKQPK----NRSEKSRKNDPKNRSDNRARIRRHPMLRRHRFR 114
>01_01_1168 - 9305084-9307172,9307751-9308460,9308624-9308821
Length = 998
Score = 29.9 bits (64), Expect = 2.6
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 295 RPFLAGSGQKRRLLSKKDRSLHSILQRPRR 384
RP AG G++RR L + +H L+RPR+
Sbjct: 188 RPQAAGHGRRRRRLGPPEGGVHRRLRRPRQ 217
>06_01_0001 -
18456-18521,18692-18874,19046-19153,19337-19396,
19755-19937,20109-20291,20816-20998,21170-21352,
21524-21581,21878-21935,22586-22643,22938-22995,
23292-23349,23998-24007
Length = 482
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 19 LRFLCCGP-SDIRRFAETTAASWPMLWTLRYSTFRRNNRCFVA 60
>05_07_0365 -
29662703-29662710,29664321-29664378,29664675-29664732,
29665029-29665086,29665737-29665794,29666091-29666134,
29666445-29666502,29666799-29666981,29667154-29667211,
29667508-29667565,29667862-29667919,29668216-29668259,
29668570-29668627,29668924-29669106,29669279-29669336,
29669633-29669676,29669987-29670044,29670341-29670398,
29670696-29670753,29671050-29671052
Length = 420
Score = 29.1 bits (62), Expect = 4.6
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +1
Query: 181 IRSICCNS*FGLRFYQNRSSNTFSCLWPLQFSTERR*GRPFLA 309
+R +CC +R + ++ ++ LW L++ST RR R F+A
Sbjct: 376 LRGLCCGP-SDIRCFAEPTAASWPMLWILRYSTFRRNNRCFVA 417
>06_01_1095 +
8984363-8984789,8985175-8985416,8985500-8985622,
8985783-8985899,8986258-8986399,8986587-8986627,
8987194-8987453,8987505-8987607,8987698-8987776,
8987856-8988115
Length = 597
Score = 28.7 bits (61), Expect = 6.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +2
Query: 716 LLHCYVSGEFYHNTNCQDCYDY*HCQYNTTGFHF 817
++HCY ++H D + HC T FHF
Sbjct: 439 IIHCYNDSIYHHLYGQSDLFSSPHCFVLTLEFHF 472
>05_05_0182 -
23045837-23046026,23046112-23046306,23046852-23047094,
23047456-23047496,23047703-23047813,23047965-23048216,
23048508-23048657,23048760-23048778,23049129-23049688
Length = 586
Score = 28.7 bits (61), Expect = 6.0
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 481 LFHDYTKNYSHTYPVLYWKLHQKYNVSKPTLRHDVAVAKLNVD 353
++HD+ ++++ TYP Y LH Y + T R D+ +D
Sbjct: 494 VYHDWCESFN-TYPRTYDLLHMSYLLGSLTNRCDIMEVAAEID 535
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,066,135
Number of Sequences: 37544
Number of extensions: 531237
Number of successful extensions: 1281
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1281
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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