Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e20
         (834 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    35   0.062
Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z82274-3|CAB05229.1|  435|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    29   5.4  
AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical...    29   5.4  
Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical pr...    28   9.5  

>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 35.1 bits (77), Expect = 0.062
 Identities = 20/77 (25%), Positives = 35/77 (45%)
 Frame = -3

Query: 562 CFASVILVKWIVTSAHCVKRDTKHRLLLFHDYTKNYSHTYPVLYWKLHQKYNVSKPTLRH 383
           C A+VI   W+VT+AHC  +      +   +   N   ++ V    +H  YN    T  +
Sbjct: 66  CGATVIDDFWLVTAAHCALQLQTRSFVYVREPKNNRERSFSVKEAYIHSGYN--NQTADN 123

Query: 382 DVAVAKLNVDFYPFSTK 332
           D+A+ +++ D      K
Sbjct: 124 DIALLRISSDLSKLGIK 140


>Z82274-4|CAB05228.1|  429|Caenorhabditis elegans Hypothetical
           protein JC8.6b protein.
          Length = 429

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 725 CYVSGEFYHNTNCQDCYD 778
           C+ +GEF  + NC+DC++
Sbjct: 185 CFANGEFCRDCNCKDCHN 202


>Z82274-3|CAB05229.1|  435|Caenorhabditis elegans Hypothetical
           protein JC8.6a protein.
          Length = 435

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +2

Query: 725 CYVSGEFYHNTNCQDCYD 778
           C+ +GEF  + NC+DC++
Sbjct: 191 CFANGEFCRDCNCKDCHN 208


>AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 424 LHQKYNVSKPTLRHDVAVAKL-NVDFYPFSTKASVFDRNPPETDVLTAVLWKTVAAIDKK 248
           LHQ     KPT + +    +L +VD +    K  + + NPP+  + +  +W       K 
Sbjct: 11  LHQHLYTEKPTQKMEEPYHELYDVDVFLAKAK-EMSELNPPDVVLFSECIWGAATVCIKT 69

Query: 247 MYLTN 233
            +L N
Sbjct: 70  FFLEN 74



 Score = 28.7 bits (61), Expect = 5.4
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 343 FSTKA-SVFDRNPPETDVLTAVLWKTVAAIDKKMYLTNDFDKIEVQITSYNRCF 185
           F TKA ++    PP+  + + ++W   A   KK++    FD  ++ ITS++  F
Sbjct: 195 FLTKAENMLVLTPPDVVLFSELIWGAAARCIKKLF----FDNFKITITSHSDIF 244


>AF039048-11|AAB94232.1|  421|Caenorhabditis elegans Hypothetical
           protein F16B4.1 protein.
          Length = 421

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 97  LYYEDKIVGVLAVKPRDCDTKYAI 26
           L+YED ++ ++ VKP D +T + I
Sbjct: 307 LFYEDAVLEMMEVKPNDVETTFII 330


>Z70684-1|CAA94597.1|  580|Caenorhabditis elegans Hypothetical
           protein F28D1.1 protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = -2

Query: 752 YGKIRH*HNNGGEEKRLKHWLRVPTRENNGHHKPQRELFTEQ 627
           Y K++  H  GG   +LK   R PT    G  K  + L  EQ
Sbjct: 38  YKKMKQ-HTGGGTRNKLKKKQRPPTENTEGRAKKPKVLTKEQ 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,973,679
Number of Sequences: 27780
Number of extensions: 465522
Number of successful extensions: 1304
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1304
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)