Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e18
(846 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BX537972-1|CAD97936.1| 345|Homo sapiens hypothetical protein pr... 66 2e-10
BC084545-1|AAH84545.1| 296|Homo sapiens LYSMD4 protein protein. 47 7e-05
BC033515-1|AAH33515.1| 215|Homo sapiens LysM, putative peptidog... 47 7e-05
AY125955-1|AAM94507.1| 215|Homo sapiens putative peptidoglycan ... 47 7e-05
BC031649-1|AAH31649.1| 227|Homo sapiens LysM, putative peptidog... 46 2e-04
AL592424-6|CAI16380.1| 227|Homo sapiens LysM, putative peptidog... 46 2e-04
BC073134-1|AAH73134.1| 505|Homo sapiens KIAA1787 protein protein. 33 1.3
AL136870-1|CAB66804.1| 1514|Homo sapiens hypothetical protein pr... 33 1.3
AB058690-1|BAB47416.1| 1564|Homo sapiens KIAA1787 protein protein. 33 1.3
AL389875-2|CAO03392.1| 1794|Homo sapiens fer-1-like 4 (C. elegan... 31 4.0
AL121586-1|CAB89410.2| 1794|Homo sapiens fer-1-like 4 (C. elegan... 31 4.0
AL109827-5|CAI20117.2| 1794|Homo sapiens fer-1-like 4 (C. elegan... 31 4.0
BC058027-1|AAH58027.1| 127|Homo sapiens LYSMD3 protein protein. 30 9.2
>BX537972-1|CAD97936.1| 345|Homo sapiens hypothetical protein
protein.
Length = 345
Score = 66.1 bits (154), Expect = 2e-10
Identities = 27/53 (50%), Positives = 41/53 (77%)
Frame = -3
Query: 667 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTELI 509
+QEGDTL AIAL++ C++A++KR+N + D + FA R+IK+PV +S LTE +
Sbjct: 108 IQEGDTLNAIALQYCCTVADIKRVNNLISDQDFFALRSIKIPVKKFSSLTETL 160
>BC084545-1|AAH84545.1| 296|Homo sapiens LYSMD4 protein protein.
Length = 296
Score = 47.2 bits (107), Expect = 7e-05
Identities = 14/55 (25%), Positives = 39/55 (70%)
Frame = -3
Query: 679 IEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVTPYSVLTE 515
++ ++ + D+L +AL++ C +A++K++N ++ +++A +++K+PV + +L E
Sbjct: 74 LQRELAQEDSLNKLALQYGCKVADIKKVNNFIREQDLYALKSVKIPVRNHGILME 128
>BC033515-1|AAH33515.1| 215|Homo sapiens LysM, putative
peptidoglycan-binding, domain containing 2 protein.
Length = 215
Score = 47.2 bits (107), Expect = 7e-05
Identities = 19/50 (38%), Positives = 36/50 (72%)
Frame = -3
Query: 688 EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 539
E +E +V+ GDTLQ IAL++ ++ ++KR N++ ++ IF ++T+ +PV
Sbjct: 68 ERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPV 117
>AY125955-1|AAM94507.1| 215|Homo sapiens putative peptidoglycan
binding domain protein-like protein protein.
Length = 215
Score = 47.2 bits (107), Expect = 7e-05
Identities = 19/50 (38%), Positives = 36/50 (72%)
Frame = -3
Query: 688 EHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 539
E +E +V+ GDTLQ IAL++ ++ ++KR N++ ++ IF ++T+ +PV
Sbjct: 68 ERHVEHRVRAGDTLQGIALKYGVTMEQIKRANKLFTNDCIFLKKTLNIPV 117
>BC031649-1|AAH31649.1| 227|Homo sapiens LysM, putative
peptidoglycan-binding, domain containing 1 protein.
Length = 227
Score = 45.6 bits (103), Expect = 2e-04
Identities = 16/51 (31%), Positives = 37/51 (72%)
Frame = -3
Query: 691 QEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 539
+E +E Q++ GDTL +AL++ ++ ++KR N+++ ++ IF ++T+ +P+
Sbjct: 36 RERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86
>AL592424-6|CAI16380.1| 227|Homo sapiens LysM, putative
peptidoglycan-binding, domain containing 1 protein.
Length = 227
Score = 45.6 bits (103), Expect = 2e-04
Identities = 16/51 (31%), Positives = 37/51 (72%)
Frame = -3
Query: 691 QEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 539
+E +E Q++ GDTL +AL++ ++ ++KR N+++ ++ IF ++T+ +P+
Sbjct: 36 RERRLEHQLEPGDTLAGLALKYGVTMEQIKRANRLYTNDSIFLKKTLYIPI 86
>BC073134-1|AAH73134.1| 505|Homo sapiens KIAA1787 protein protein.
Length = 505
Score = 33.1 bits (72), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 482 FNLETNAKIDTATLTKQWHTAVTSKQFTAKR 390
FNL N +++ TLTK+WH A A R
Sbjct: 342 FNLRVNPRLEAGTLTKKWHMAYHGSNVAAVR 372
>AL136870-1|CAB66804.1| 1514|Homo sapiens hypothetical protein
protein.
Length = 1514
Score = 33.1 bits (72), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 482 FNLETNAKIDTATLTKQWHTAVTSKQFTAKR 390
FNL N +++ TLTK+WH A A R
Sbjct: 1351 FNLRVNPRLEAGTLTKKWHMAYHGSNVAAVR 1381
>AB058690-1|BAB47416.1| 1564|Homo sapiens KIAA1787 protein protein.
Length = 1564
Score = 33.1 bits (72), Expect = 1.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -2
Query: 482 FNLETNAKIDTATLTKQWHTAVTSKQFTAKR 390
FNL N +++ TLTK+WH A A R
Sbjct: 1401 FNLRVNPRLEAGTLTKKWHMAYHGSNVAAVR 1431
>AL389875-2|CAO03392.1| 1794|Homo sapiens fer-1-like 4 (C. elegans)
protein.
Length = 1794
Score = 31.5 bits (68), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 700 FCIIVCHCGRCRRFFYCSSRHTILKSSPLCMTRV 801
FC+ +CHC C + C HT S C+ +V
Sbjct: 515 FCLPLCHCKPCMHVWSCWEDHTWRLQSSNCVRKV 548
>AL121586-1|CAB89410.2| 1794|Homo sapiens fer-1-like 4 (C. elegans)
protein.
Length = 1794
Score = 31.5 bits (68), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 700 FCIIVCHCGRCRRFFYCSSRHTILKSSPLCMTRV 801
FC+ +CHC C + C HT S C+ +V
Sbjct: 515 FCLPLCHCKPCMHVWSCWEDHTWRLQSSNCVRKV 548
>AL109827-5|CAI20117.2| 1794|Homo sapiens fer-1-like 4 (C. elegans)
protein.
Length = 1794
Score = 31.5 bits (68), Expect = 4.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 700 FCIIVCHCGRCRRFFYCSSRHTILKSSPLCMTRV 801
FC+ +CHC C + C HT S C+ +V
Sbjct: 515 FCLPLCHCKPCMHVWSCWEDHTWRLQSSNCVRKV 548
>BC058027-1|AAH58027.1| 127|Homo sapiens LYSMD3 protein protein.
Length = 127
Score = 30.3 bits (65), Expect = 9.2
Identities = 11/18 (61%), Positives = 16/18 (88%)
Frame = -3
Query: 667 VQEGDTLQAIALRFYCSI 614
+QEGDTL AIAL++ C++
Sbjct: 69 IQEGDTLNAIALQYCCTV 86
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 106,610,658
Number of Sequences: 237096
Number of extensions: 2006941
Number of successful extensions: 4515
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4515
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10705443456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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