Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e18
         (846 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79755-12|CAN86921.1|  142|Caenorhabditis elegans Hypothetical p...    48   6e-06
Z79755-11|CAN86920.1|  209|Caenorhabditis elegans Hypothetical p...    48   6e-06
AF000196-1|AAC24252.1|  158|Caenorhabditis elegans Hypothetical ...    43   3e-04
Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical pr...    33   0.34 
Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical pr...    29   5.5  
Z83128-2|CAB05636.1|  412|Caenorhabditis elegans Hypothetical pr...    29   5.5  
U41109-17|AAO12426.1|  726|Caenorhabditis elegans Hypothetical p...    29   5.5  
U41109-15|AAZ91354.1|  819|Caenorhabditis elegans Hypothetical p...    29   5.5  
U41109-14|AAO12423.1|  840|Caenorhabditis elegans Hypothetical p...    29   5.5  
AY305830-1|AAR11975.1|  418|Caenorhabditis elegans nuclear recep...    29   5.5  
AF273811-1|AAG15160.1|  415|Caenorhabditis elegans nuclear recep...    29   5.5  
AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear recep...    29   5.5  
AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical ...    29   5.5  
U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical pr...    28   9.6  
U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical pr...    28   9.6  
AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormo...    28   9.6  

>Z79755-12|CAN86921.1|  142|Caenorhabditis elegans Hypothetical
           protein F43G9.2b protein.
          Length = 142

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 18/49 (36%), Positives = 34/49 (69%)
 Frame = -3

Query: 682 FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVT 536
           FIE +V+ GDTL  +A+++  ++AE+KR+N +  + +  A   +K+PV+
Sbjct: 39  FIERKVKNGDTLNKLAIKYQVNVAEIKRVNNMVSEQDFMALSKVKIPVS 87


>Z79755-11|CAN86920.1|  209|Caenorhabditis elegans Hypothetical
           protein F43G9.2a protein.
          Length = 209

 Score = 48.4 bits (110), Expect = 6e-06
 Identities = 18/49 (36%), Positives = 34/49 (69%)
 Frame = -3

Query: 682 FIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPVT 536
           FIE +V+ GDTL  +A+++  ++AE+KR+N +  + +  A   +K+PV+
Sbjct: 39  FIERKVKNGDTLNKLAIKYQVNVAEIKRVNNMVSEQDFMALSKVKIPVS 87


>AF000196-1|AAC24252.1|  158|Caenorhabditis elegans Hypothetical
           protein B0041.3 protein.
          Length = 158

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 21/63 (33%), Positives = 37/63 (58%)
 Frame = -3

Query: 727 GRSDIQLYKIKPQEHFIEAQVQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIK 548
           G +  Q   + P  + I  QVQ  DTL+ IAL+  CS++ L R N++   + +F ++ I+
Sbjct: 33  GTTQSQSSPVTPCSYTIY-QVQTDDTLERIALKHNCSVSSLVRANKLWSPSALFMKQFIR 91

Query: 547 VPV 539
           +P+
Sbjct: 92  IPI 94


>Z83104-3|CAB05476.1|  295|Caenorhabditis elegans Hypothetical
           protein F09B12.2 protein.
          Length = 295

 Score = 32.7 bits (71), Expect = 0.34
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
 Frame = +1

Query: 358 QHCSQWHSLSPLFAVNCFDVTAVC------HCFVRVAVSILAFVSRLKVSALVALMVLTL 519
           +HC   HS+SPL A +C  V  VC      HC    AV +  F  R  V+A++ L ++TL
Sbjct: 103 KHCHSCHSMSPLRAHHC-PVCDVCILRRDHHCSFG-AVCVGHFNQRYFVAAVINLFIMTL 160


>Z67995-4|CAO78723.1|  233|Caenorhabditis elegans Hypothetical
           protein M153.5 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = -2

Query: 359 CYYEQHFSVF-CCS-LFGRRTSRTSHRGHAIVAKQRKDSCRSYSCERIDITWC 207
           C  +  F++  CCS  F RR+S +S + + +V +  +D  ++   +R    WC
Sbjct: 69  CANDPDFALIQCCSSCFDRRSSLSSEKYNLVVRRHLEDPMKATCIDRRGGDWC 121


>Z83128-3|CAB05637.1|  415|Caenorhabditis elegans Hypothetical
           protein W01D2.2b protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 323 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 240
           S++  RT    H G  +VAK+++++CRS
Sbjct: 57  SIWKNRTYACRHGGKCLVAKEQRNACRS 84


>Z83128-2|CAB05636.1|  412|Caenorhabditis elegans Hypothetical
           protein W01D2.2a protein.
          Length = 412

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 323 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 240
           S++  RT    H G  +VAK+++++CRS
Sbjct: 57  SIWKNRTYACRHGGKCLVAKEQRNACRS 84


>U41109-17|AAO12426.1|  726|Caenorhabditis elegans Hypothetical
           protein F52E1.13d protein.
          Length = 726

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 667 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 539
           + E DTL+ +A    C++ EL ++N++     +F  + I VP+
Sbjct: 26  ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 67


>U41109-15|AAZ91354.1|  819|Caenorhabditis elegans Hypothetical
           protein F52E1.13c protein.
          Length = 819

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 667 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 539
           + E DTL+ +A    C++ EL ++N++     +F  + I VP+
Sbjct: 5   ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 46


>U41109-14|AAO12423.1|  840|Caenorhabditis elegans Hypothetical
           protein F52E1.13a protein.
          Length = 840

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 667 VQEGDTLQAIALRFYCSIAELKRINQIHKDNEIFARRTIKVPV 539
           + E DTL+ +A    C++ EL ++N++     +F  + I VP+
Sbjct: 26  ITETDTLERVAASHDCTVGELMKLNKM-ASRMVFPGQKILVPL 67


>AY305830-1|AAR11975.1|  418|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 323 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 240
           S++  RT    H G  +VAK+++++CRS
Sbjct: 63  SIWKNRTYACRHGGKCLVAKEQRNACRS 90


>AF273811-1|AAG15160.1|  415|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 415

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 323 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 240
           S++  RT    H G  +VAK+++++CRS
Sbjct: 60  SIWKNRTYACRHGGKCLVAKEQRNACRS 87


>AF273809-1|AAG15158.1|  418|Caenorhabditis elegans nuclear receptor
           NHR-61 protein.
          Length = 418

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -2

Query: 323 SLFGRRTSRTSHRGHAIVAKQRKDSCRS 240
           S++  RT    H G  +VAK+++++CRS
Sbjct: 60  SIWKNRTYACRHGGKCLVAKEQRNACRS 87


>AC087079-2|AAK27863.1|   67|Caenorhabditis elegans Hypothetical
           protein Y37E3.3 protein.
          Length = 67

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 682 FIEAQVQEGDTLQAIALRFYC 620
           F++++  EGD L A+ LR YC
Sbjct: 24  FLQSEYSEGDALDALGLRRYC 44


>U46674-5|AAA85757.1|  708|Caenorhabditis elegans Hypothetical
           protein T26A8.1 protein.
          Length = 708

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 18/40 (45%), Positives = 22/40 (55%)
 Frame = -3

Query: 361 AVIMNSTLASSVAPYSDVEPAEQVTEDTQLLPNKEKIPVE 242
           AVI NST A++V   S V+  E  T   Q L  K +I VE
Sbjct: 256 AVIDNSTQAANVTDDSIVKKPEVATGTVQKLKTKTEINVE 295


>U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical
           protein C45G9.8 protein.
          Length = 465

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 751 NNKKNDDNGRSDIQL-YKIKPQEHFIEAQVQEGDT 650
           N  K+DD G+SD  L + I+ QE FI ++    +T
Sbjct: 414 NESKSDDEGKSDKSLSFVIEKQEEFIYSRANPIET 448


>AC006674-1|AAK68390.1|  388|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 119 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 6/39 (15%)
 Frame = -2

Query: 332 FCCSLFGRRT-SRTS-----HRGHAIVAKQRKDSCRSYS 234
           F C  F RRT  R S     H GH +V +  ++SCR +S
Sbjct: 42  FGCKGFFRRTLKRPSEYTCRHNGHCVVDRHERNSCRFFS 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,736,648
Number of Sequences: 27780
Number of extensions: 345439
Number of successful extensions: 995
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 995
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)