Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e17
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   379   e-105
AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical ...    37   0.018
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    30   2.0  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    30   2.0  
Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical pr...    28   6.2  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   8.1  
Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical pr...    28   8.1  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    28   8.1  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    28   8.1  
U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical p...    28   8.1  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  379 bits (932), Expect = e-105
 Identities = 165/225 (73%), Positives = 194/225 (86%)
 Frame = -3

Query: 720 FVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKEL 541
           F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA++ FRDPYK+KT K  
Sbjct: 16  FKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAIIAFRDPYKYKTVKTT 75

Query: 540 FIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFAT 361
            +A EG++TGQF++CG KA +++GN++PVG +PEGT +CN+E K GDRG +ARASGN+AT
Sbjct: 76  VVAAEGMHTGQFIHCGAKAQIQIGNIVPVGTLPEGTTICNVENKSGDRGVIARASGNYAT 135

Query: 360 VIGHNPDAKRTRVKLPSGAKKVLPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNC 181
           VI HNPD K+TR++LPSGAKKV+ S NR M+G+VAGGGR DKP+LKAGR+YHKYK KRN 
Sbjct: 136 VIAHNPDTKKTRIRLPSGAKKVVQSVNRAMIGLVAGGGRTDKPLLKAGRSYHKYKAKRNS 195

Query: 180 WPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVGLIAA 46
           WP VRGVAMNPVEHPHGGGNHQHIG  STV+R  SAG+KVGLIAA
Sbjct: 196 WPRVRGVAMNPVEHPHGGGNHQHIGHPSTVRRDASAGKKVGLIAA 240


>AF045646-7|AAK29833.2|  321|Caenorhabditis elegans Hypothetical
           protein F56B3.8 protein.
          Length = 321

 Score = 36.7 bits (81), Expect = 0.018
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = -3

Query: 471 GNVMPVGAMPEGTIVCNLEE-KMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 295
           GN  P+G++  GT++ ++E     D     +A+G  AT++ H  D   T VKLP   +  
Sbjct: 160 GNAYPIGSLAAGTVINSIERYPTMDSETFVKAAGTSATIVRHQGDF--TVVKLPHKHEFS 217

Query: 294 LPSSNRGMVGIVAGGGRIDKPILKAGRAYHKYKVK 190
           L  +    VG ++    ID  I  + + + ++  K
Sbjct: 218 LHRTCMATVGRLSHAD-IDGKIFGSAQMHRRFGYK 251


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 741 VRVPVQFFVSHTKK---RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 574
           + +PV +FV  ++     + A  +  +  A  HG +  +V  I+H P R + LA +HF+
Sbjct: 254 ISLPVSYFVMASENDYYNQAATNIAMIAIA-CHGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = -3

Query: 741 VRVPVQFFVSHTKK---RKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 574
           + +PV +FV  ++     + A  +  +  A  HG +  +V  I+H P R + LA +HF+
Sbjct: 254 ISLPVSYFVMASENDYYNQAATNIAMIAIA-CHGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z68338-1|CAA92757.1|  134|Caenorhabditis elegans Hypothetical
           protein T24B8.1 protein.
          Length = 134

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -3

Query: 357 IGHNPDAKRTRVKLPSGAKKVL 292
           IGH  D +RTR  LP+G KKVL
Sbjct: 57  IGHGSD-RRTRFVLPNGYKKVL 77


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 717 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 592
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z81586-6|CAB04697.2|  393|Caenorhabditis elegans Hypothetical
           protein T05F1.8 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 191 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 310
           LT   W+   +FK+ +++ RPPP  +P      L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPQMPESLKKKLGIPGTTEVAP 352


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = +3

Query: 198 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 377
           C+C    Q     CQ   +QQQ   C C   A+P   QTV +        C QS  +  Q
Sbjct: 37  CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93

Query: 378 RHVPDDLYHPFSLQDC 425
                    P   Q C
Sbjct: 94  SAPAVSQCQPMCQQQC 109


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/76 (28%), Positives = 27/76 (35%)
 Frame = +3

Query: 198 CTCGMPFQLSK*VCQYVHLQQQYRPCLCCLMAEPSWLQTVALLLYA*HQDCVQSQWRSFQ 377
           C+C    Q     CQ   +QQQ   C C   A+P   QTV +        C QS  +  Q
Sbjct: 37  CSCQQVQQTQSCSCQSAPVQQQAPSCSC---AQPQQTQTVQVQSTQCAPACQQSCRQQCQ 93

Query: 378 RHVPDDLYHPFSLQDC 425
                    P   Q C
Sbjct: 94  SAPAVSQCQPMCQQQC 109


>U49830-16|AAK31480.1|  392|Caenorhabditis elegans Hypothetical
           protein C33F10.12 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = +2

Query: 191 LTLYLWYALPAFKIGLSI-RPPPATIP---TMPLLLDGRTFLAP 310
           LT   W+   +FK+ +++ RPPP  +P      L + G T +AP
Sbjct: 309 LTALQWFIYDSFKVAMNLPRPPPPRMPESLKKKLGIPGTTEVAP 352


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,793,754
Number of Sequences: 27780
Number of extensions: 442889
Number of successful extensions: 1186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1185
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)