Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e15
         (610 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    28   0.93 
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   2.1  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    26   5.0  
SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr...    25   8.7  
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    25   8.7  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    25   8.7  

>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 28.3 bits (60), Expect = 0.93
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 118 SANALHFFSSILFPLGCKSVKNTCDLQQYACFIQNVICNPYHLQPY 255
           S +  + F S  +   C +V  TC  + Y  F+  V+   +HL+ +
Sbjct: 176 SIHLFYVFQSFPWTYFCLAVSGTCISELYVLFVHPVVQELFHLESH 221


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -2

Query: 252 RLEVVRIADDILDKA--CILL*VTCIFNTFTAKRKQDGRKEMQCISRISN 109
           RLE+    ++ +D    CILL V    N +TA++++D  K     S I N
Sbjct: 272 RLEIFLAMENQIDAGFLCILLMVLAFGNQYTAEQQEDVSKSNFHASNIGN 321


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 21/94 (22%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
 Frame = +2

Query: 59  LQQSPFLHFPSQVSFLLLDILLMHCISFLPSCF---RLAVKVLKIHVTYNNMHALSKMSS 229
           L +   L FP  V    +  L +  +S++PS F    LA +    ++++ +M+++S   S
Sbjct: 51  LSKYDHLEFPGAVKRSFIPSLFIAVLSYIPSWFVNPLLAARWTIGYLSWESMNSVSCSIS 110

Query: 230 AILTTSSLTKVVSYVAVAFFKFSHFSRSCDGVHG 331
               T S    + +    F    + SR    + G
Sbjct: 111 KRFGTLSGALFILFSCAQFHLVYYMSRPLSNIFG 144


>SPAPJ691.02 |||yippee-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -3

Query: 221 FWIKHAYCCRSHVFL 177
           F ++H +CCR H ++
Sbjct: 65  FIVRHIHCCRCHTYI 79


>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/47 (21%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
 Frame = +2

Query: 152 CFRLAVKVLKIHVTYNNMHALSKMSSA-ILTTSSLTKVVSYVAVAFF 289
           C+ L   ++ +H  + N+H   KM+ A  ++ ++L  ++  +   F+
Sbjct: 368 CYILTFSLMILHTDFFNIHNRQKMTRAEFISNTNLPTILPEILECFY 414


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 236 GLQMTFWIKHAYCCRSHVFLTLLQPSGNKMEEKKC 132
           G ++T W  H YC    +  +LLQ  G+  E  +C
Sbjct: 162 GSELTAWSTHQYC---EMVRSLLQSMGHSPELVQC 193


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,971
Number of Sequences: 5004
Number of extensions: 48878
Number of successful extensions: 123
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)