Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e15
(610 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0155 - 20712601-20713553,20713618-20714000,20714240-207142... 29 2.9
09_04_0337 + 16796378-16796397,16796646-16796812,16798024-167983... 28 5.0
03_04_0147 + 17690840-17691687,17692328-17692532,17693048-176931... 28 5.0
05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433... 28 6.7
10_08_0042 - 14383143-14383628,14383647-14384609,14384697-143864... 27 8.8
05_06_0263 + 26752759-26754393 27 8.8
03_02_0884 + 12160453-12160518,12160598-12160696,12163223-121633... 27 8.8
>11_06_0155 -
20712601-20713553,20713618-20714000,20714240-20714271,
20714315-20714571,20714699-20714724,20714894-20715081,
20715302-20715595,20715714-20715752,20715827-20715944,
20716076-20716157,20716610-20716668,20717156-20717221,
20717358-20717447,20718142-20718236
Length = 893
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 218 WIKHAYCCRSHVFLTLLQPSGNKMEEKKCNALAEYLIAKK 99
WI+ V LT L+P + +EK+C A E+ I ++
Sbjct: 316 WIRKVKLQPFTVHLTWLEPCPQQEQEKRCKATCEFTIEER 355
>09_04_0337 +
16796378-16796397,16796646-16796812,16798024-16798339,
16798413-16798494,16798927-16799019
Length = 225
Score = 28.3 bits (60), Expect = 5.0
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -2
Query: 375 WQTLVNDINSSIRRF----P*TPSQLR-LKWENLKNATAT*ETTLVRLEVVRIADDILDK 211
W +V DI +R F P QL+ L+W +N T TL+ + V +A +D
Sbjct: 159 WLAVVRDITWGLRSFLAFLAEQPRQLKHLEWPGFRNTLRTATLTLILVAVFIVALSSVDA 218
Query: 210 A-CILL 196
A C +L
Sbjct: 219 ALCYIL 224
>03_04_0147 +
17690840-17691687,17692328-17692532,17693048-17693199,
17693306-17693597,17693807-17693962,17694561-17694764,
17694875-17694987,17695078-17695192,17695293-17695382,
17695463-17695666,17695764-17695859,17696094-17696216,
17696308-17696400,17696477-17696641,17697179-17697268,
17697356-17697520
Length = 1036
Score = 28.3 bits (60), Expect = 5.0
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -3
Query: 191 SHVFLTLLQPSGNKMEEKKCNALAEYLIAKKRLDLEN 81
S V L L +P ++ME KK YL R+D +N
Sbjct: 367 SAVMLRLCEPFLDRMESKKDKIDVNYLFCNDRIDFKN 403
>05_04_0149 -
18441561-18442082,18442723-18442861,18443295-18443352,
18443630-18443664,18444528-18444886,18445304-18445450,
18445849-18447954,18448300-18448494,18448629-18448709,
18448758-18448874,18449281-18449370,18449466-18449552,
18450293-18450315,18450675-18450804
Length = 1362
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 397 VCGICCLIIDVFFRRHKFC*NHRLIFCHGC 486
+C C L ++ +RH C N L+FCH C
Sbjct: 733 MCSGCRLPFNLRRKRHN-CYNCALVFCHAC 761
>10_08_0042 -
14383143-14383628,14383647-14384609,14384697-14386443,
14387901-14388010,14388767-14389003
Length = 1180
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = -3
Query: 170 LQPSGNKMEEKKCNALAEYLIAKKRLDLENEEKEIVVAK-LKL-DFVCSPTLSYL 12
LQP G+K + C++L E ++ K ++ E EI+ + + L DF P + +L
Sbjct: 783 LQP-GSKTDRSSCHSLMEGILKKAGIEKSIEFAEIIASSGITLDDFFLCPLIKHL 836
>05_06_0263 + 26752759-26754393
Length = 544
Score = 27.5 bits (58), Expect = 8.8
Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 7/49 (14%)
Frame = -3
Query: 179 LTLLQPSGNKMEEKKCNALAEYLIAK---KRLDL-ENEEKE---IVVAK 54
L +L+ +GN++ K ALAE L A K+L L ENE K+ +V+AK
Sbjct: 386 LEVLEMAGNEINAKASQALAECLTAMQSLKKLTLAENELKDDGAVVIAK 434
>03_02_0884 +
12160453-12160518,12160598-12160696,12163223-12163357,
12163841-12163891,12164070-12164693,12164779-12164952,
12165047-12165272,12165368-12165459,12165551-12165649,
12165743-12165791,12165878-12165931,12166235-12166290,
12166367-12166438,12166520-12166615,12167069-12167418,
12167508-12167679,12167777-12167875,12167959-12168090,
12168185-12168288,12168369-12168401,12168744-12168930,
12169016-12169024
Length = 992
Score = 27.5 bits (58), Expect = 8.8
Identities = 15/58 (25%), Positives = 30/58 (51%)
Frame = +2
Query: 185 HVTYNNMHALSKMSSAILTTSSLTKVVSYVAVAFFKFSHFSRSCDGVHGKRRIDELIS 358
H+ N + L+ S +L + + KV + +S F + +GV+GKR ++++ S
Sbjct: 323 HLAVNYLDFLNFGSQKVLLDTPIIKVWKRSMIK--DYSKFDKISEGVYGKRPVNDIAS 378
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,531,311
Number of Sequences: 37544
Number of extensions: 308226
Number of successful extensions: 651
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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