Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e15
(610 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical pr... 29 2.6
U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical pr... 28 4.5
U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical pr... 28 4.5
U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related... 28 6.0
U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon gu... 27 7.9
U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon gu... 27 7.9
U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon gu... 27 7.9
U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon gu... 27 7.9
AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFO... 27 7.9
AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFOR... 27 7.9
>Z69634-3|CAA93454.4| 553|Caenorhabditis elegans Hypothetical
protein B0001.5 protein.
Length = 553
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = -3
Query: 98 RLDLENEEKEIVVAKLKLDFVCSPTLSYLKNN 3
+L L +EEKE+ K KL +C +LS+ N+
Sbjct: 497 KLHLTSEEKELKKLKTKLSRICKLSLSFTAND 528
>U55369-5|AAM29663.2| 1046|Caenorhabditis elegans Hypothetical
protein C18C4.5b protein.
Length = 1046
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -2
Query: 363 VNDINSSIRRFP*TPSQLRLKWENLKNATAT*ETTLVRLE 244
+++++ ++R SQLR + E LKNA +T E+TL L+
Sbjct: 198 LSEMDRTLREEQQQKSQLRSQTETLKNALSTSESTLSMLK 237
>U55369-4|AAM29662.1| 1022|Caenorhabditis elegans Hypothetical
protein C18C4.5a protein.
Length = 1022
Score = 28.3 bits (60), Expect = 4.5
Identities = 15/40 (37%), Positives = 26/40 (65%)
Frame = -2
Query: 363 VNDINSSIRRFP*TPSQLRLKWENLKNATAT*ETTLVRLE 244
+++++ ++R SQLR + E LKNA +T E+TL L+
Sbjct: 198 LSEMDRTLREEQQQKSQLRSQTETLKNALSTSESTLSMLK 237
>U88308-9|AAB42325.1| 933|Caenorhabditis elegans Patched related
family protein 2 protein.
Length = 933
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +2
Query: 227 SAILTTSSLTKVVSYVAVAFFKFSHFSRSCDGVHGKRRIDELIS-FTRVC 373
S I+ S L + +Y+ V FFK S S +HG + L+S F R C
Sbjct: 811 STIIAVSVLADIPAYMIVTFFKTVVLSISLGLLHGLVFLPVLLSIFVRGC 860
>U50067-4|AAA93439.3| 1144|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform a protein.
Length = 1144
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 307 SKLRWSSWETTNRRINIIYKGLPSLLLQFIVCGICCLI 420
SK+ + + R + ++ L LLL I+C ICC++
Sbjct: 1015 SKITTTGTSSRERNVYLLILLLLILLLLLIICCICCVV 1052
>U50067-3|AAZ32801.1| 1147|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform d protein.
Length = 1147
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 307 SKLRWSSWETTNRRINIIYKGLPSLLLQFIVCGICCLI 420
SK+ + + R + ++ L LLL I+C ICC++
Sbjct: 1015 SKITTTGTSSRERNVYLLILLLLILLLLLIICCICCVV 1052
>U50067-2|AAY86218.1| 1328|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform b protein.
Length = 1328
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 307 SKLRWSSWETTNRRINIIYKGLPSLLLQFIVCGICCLI 420
SK+ + + R + ++ L LLL I+C ICC++
Sbjct: 1199 SKITTTGTSSRERNVYLLILLLLILLLLLIICCICCVV 1236
>U50067-1|AAZ32800.1| 1331|Caenorhabditis elegans Sensory axon
guidance protein 7,isoform c protein.
Length = 1331
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 307 SKLRWSSWETTNRRINIIYKGLPSLLLQFIVCGICCLI 420
SK+ + + R + ++ L LLL I+C ICC++
Sbjct: 1199 SKITTTGTSSRERNVYLLILLLLILLLLLIICCICCVV 1236
>AB206670-1|BAD97389.1| 1147|Caenorhabditis elegans SAX-7 SHORTFORM
protein.
Length = 1147
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 307 SKLRWSSWETTNRRINIIYKGLPSLLLQFIVCGICCLI 420
SK+ + + R + ++ L LLL I+C ICC++
Sbjct: 1015 SKITTTGTSSRERNVYLLILLLLILLLLLIICCICCVV 1052
>AB206669-1|BAD97388.1| 1331|Caenorhabditis elegans SAX-7 LONGFORM
protein.
Length = 1331
Score = 27.5 bits (58), Expect = 7.9
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 307 SKLRWSSWETTNRRINIIYKGLPSLLLQFIVCGICCLI 420
SK+ + + R + ++ L LLL I+C ICC++
Sbjct: 1199 SKITTTGTSSRERNVYLLILLLLILLLLLIICCICCVV 1236
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,627,821
Number of Sequences: 27780
Number of extensions: 278082
Number of successful extensions: 672
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 672
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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