Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e11
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|c...    29   0.76 
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    26   5.4  
SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    26   7.1  
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom...    25   9.4  
SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor c...    25   9.4  
SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces po...    25   9.4  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   9.4  

>SPBC12C2.03c |||FAD binding protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 571

 Score = 29.1 bits (62), Expect = 0.76
 Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
 Frame = +2

Query: 236 QTCVMSESLPIGCRRAPSEHDQASN---SENKKSPAF 337
           +TCV +E+  I CR +PSE  +++N   S NK S  F
Sbjct: 27  KTCVSNENGCINCRCSPSEPHESANVDESVNKLSKTF 63


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +1

Query: 7   SRKTLKIWNRTHGFFNPTQPHNTH 78
           S++ L  WNR  G      PH+TH
Sbjct: 161 SKEILAEWNRREGALVAENPHSTH 184


>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 340 SACLYVCGPLRRSSLIFDLFKSDFHSVFID*DNLIDFF 453
           +AC+Y+ G    + L+ D FK   HS F   + L+D +
Sbjct: 138 AACMYIVGYPNEARLLMDNFKWG-HSFFEVNEELLDIY 174


>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1692

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = +2

Query: 179 NLIKIKFKFLTERALLRRRQTCVMSESL--PIGCRRAPSEHDQASNSENKKSPA 334
           N   +  +F TER LL   Q C++ E L    GC+      D+  N E+  S A
Sbjct: 334 NFYLLLIQFNTERILLPHEQPCIIFERLLSLFGCK---VTSDEEINEEDNYSVA 384


>SPAC29A4.10 |rrn5||RNA polymerase I upstream activation factor
           complex subunit Rrn5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 556

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 12/26 (46%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -3

Query: 704 KWKSSSDDLYDTNNF-ELLPRFPEFD 630
           K K+S++DL+DTN   ++  RF  FD
Sbjct: 183 KNKTSNEDLFDTNEMRKISERFYHFD 208


>SPAC630.12 |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -1

Query: 688 LMIFMIPIILSFCRDFLNSTLIQVAIF-THSKTISLTISIRNFLKMVRI 545
           + IF   I+L     F  +    + ++ TH++  SL+ +I  F K+VRI
Sbjct: 350 ISIFFALILLRTAIFFFGTDRYSLPLYKTHARRFSLSTTIHLFKKIVRI 398


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 712  IICKGSKHCKLCLTLNSSI 768
            +I  G+ +CK CL +N SI
Sbjct: 2903 LILAGTTNCKACLAINESI 2921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,880,414
Number of Sequences: 5004
Number of extensions: 54097
Number of successful extensions: 156
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)