Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e11
         (793 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0362 - 2832100-2832123,2832566-2832596,2832805-2833541,283...    28   7.4  
04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    28   7.4  
06_03_0541 - 21944696-21944851,21944939-21945142,21945438-219474...    28   9.8  

>05_01_0362 -
           2832100-2832123,2832566-2832596,2832805-2833541,
           2834333-2834825,2835762-2835770,2838062-2838561
          Length = 597

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 203 FLTERALLRRRQTCVMSESLPIGCRRAPSE 292
           FLTER L+    +C M ES+   CRR  +E
Sbjct: 369 FLTERGLVDVSASCPMLESVLYFCRRMTNE 398


>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 278 RAPSEHDQASNSENKKSPAFEARASMCVVHCGGPP 382
           R P +H QA     ++   FE    +  V+CGG P
Sbjct: 125 RRPQQHQQAPAYRRQQQHQFEDGTGILSVYCGGLP 159


>06_03_0541 -
           21944696-21944851,21944939-21945142,21945438-21947472,
           21947644-21947720,21948289-21948477,21949188-21949448,
           21949527-21949632,21951330-21951517,21951814-21951971,
           21952015-21952840,21952947-21953210
          Length = 1487

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 677 YDTNNFELLPRFPEFDPNSGCDFHSLKDDI 588
           Y+T    +LP + E D   G + H+++DD+
Sbjct: 547 YNTKPSNILPHYGENDEEEGDEKHTIQDDV 576


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,239,484
Number of Sequences: 37544
Number of extensions: 308206
Number of successful extensions: 739
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2138915688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)