Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e10
(812 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3 s... 30 0.34
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 30 0.34
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 30 0.45
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 29 0.79
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 28 1.4
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 28 1.8
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 27 2.4
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 2.4
SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|ch... 27 2.4
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 27 2.4
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c... 27 2.4
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ... 27 3.2
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 27 3.2
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr... 27 3.2
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 27 4.2
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos... 26 5.5
SPBC21C3.07c |||actin binding methyltransferase |Schizosaccharom... 26 5.5
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 5.5
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces... 26 5.5
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 9.7
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa... 25 9.7
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|... 25 9.7
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.7
>SPBC428.20c |alp6|SPBC902.01c|gamma tubulin complex Spc98/GCP3
subunit Alp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 821
Score = 30.3 bits (65), Expect = 0.34
Identities = 33/150 (22%), Positives = 64/150 (42%)
Frame = -1
Query: 713 NKSTSVRLDLVDVACEANDFLKDVEPLTFDKEHIDNVHQKCDSHLNEIQKLKAENDSLKI 534
+K+ SV + + + + + P TF + ID++ K S + + ND+L
Sbjct: 21 SKNPSVPYTIETIVSFFQEIIHSISPDTFQLD-IDDILYKIYSKIPP----EENNDALFS 75
Query: 533 ELRNIYETHPWKYALYNKSRSGFEMDDLSPLPKPFDDSVEDGNSVNNLESEMVITMKNCC 354
+L N+ + ++NKS+ + + LSP+ + D V ++ + + I
Sbjct: 76 KLSNLVSRLKSQTVIHNKSQILYFLYLLSPISQSSRD-VSSHLLDESISNPINIPSTEVE 134
Query: 353 NKNFKQVSVLKVLHKTNVTTLSDSDENRSS 264
+ NF Q +V +T + EN SS
Sbjct: 135 SSNFGQTRYDQVPENPQITDWDEGLENESS 164
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 30.3 bits (65), Expect = 0.34
Identities = 26/87 (29%), Positives = 37/87 (42%)
Frame = -1
Query: 515 ETHPWKYALYNKSRSGFEMDDLSPLPKPFDDSVEDGNSVNNLESEMVITMKNCCNKNFKQ 336
E HP +L KS+S + DD+ P+ K S + N N+ + M N KN K+
Sbjct: 38 ENHPLSESLNKKSKSESDEDDI-PIRKRRASSKK--NMSNSSSKKRAKVMGNGGLKNGKK 94
Query: 335 VSVLKVLHKTNVTTLSDSDENRSSKEN 255
+V+K N R SK N
Sbjct: 95 TAVVKEEEDFNEIAKPSPKHKRVSKAN 121
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 29.9 bits (64), Expect = 0.45
Identities = 16/39 (41%), Positives = 18/39 (46%)
Frame = +1
Query: 298 VTFVLCNTFKTDTCLKFLLQQFFIVITISDSKLFTEFPS 414
V VL TC L + FI +TI D KL FPS
Sbjct: 617 VLVVLDRWHSMSTCSPLFLPETFINLTIQDQKLLGTFPS 655
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 29.1 bits (62), Expect = 0.79
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Frame = -1
Query: 650 KDVEPLTFDKEHIDNVHQKCDSHLNEI-----QKLKAENDSLKIELRNIYETHPWKYALY 486
KD +PL +K H + +SH NE +K K +ND K L++ KY+
Sbjct: 60 KDNKPLD-NKNDPKKTHNEDESHTNESLPSTDKKKKKDNDDFKQNLKSSSNKTEEKYSAT 118
Query: 485 NKSRS--------GFEMDDLSPLPKPFDDSVEDGNSVNNLESEMV 375
S+S G E +D PL F+ +V SV ++ +++
Sbjct: 119 QASKSKNDEFELGGEENEDEMPLNGEFNKNVPAKYSVPDVYPQLL 163
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 28.3 bits (60), Expect = 1.4
Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 3/122 (2%)
Frame = -1
Query: 620 EHIDNVHQKCDSHLNEIQKLKAEN-DSLKIELRNIYETHPWKYALY--NKSRSGFEMDDL 450
EH D+++++ N + + E+ D+ E N+ + + + Y N ++ +DDL
Sbjct: 9 EHSDDLNKEESGESNRVNIEEPEHHDNSNKESTNLDDLNMLEEPKYHDNSNKESTNLDDL 68
Query: 449 SPLPKPFDDSVEDGNSVNNLESEMVITMKNCCNKNFKQVSVLKVLHKTNVTTLSDSDENR 270
+ L +P S N +S M+ K+ N N K+ + L L+ + DS
Sbjct: 69 NMLEEPEHHDNSKKESTNLDDSNMLEEPKHHDNSN-KESTNLDDLNMSEEPKHHDSSNKE 127
Query: 269 SS 264
S+
Sbjct: 128 ST 129
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 27.9 bits (59), Expect = 1.8
Identities = 21/89 (23%), Positives = 47/89 (52%), Gaps = 4/89 (4%)
Frame = -1
Query: 773 NRECNKKSSTVGRRKTRRKLNKSTSVRLDLVDVACEANDFLKDVEPLTFDKEHIDNVHQK 594
N+ + + ++ ++ T + N S ++ + A + ND + V L +KE +DN ++
Sbjct: 1160 NKLLHSQFDSLSQQITVLQQNSSENLNISANLEAVQDNDLRELVSYLRHEKEIMDNKYEL 1219
Query: 593 C---DSHLN-EIQKLKAENDSLKIELRNI 519
+ LN +++ L++ DSL++EL +
Sbjct: 1220 TILDNRGLNQQVKSLQSTVDSLQLELNRL 1248
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 27.5 bits (58), Expect = 2.4
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = -1
Query: 641 EPLTFDKEHIDNVHQKCDSHLNEIQKLKAENDSLKIELRNI 519
+ L +EH+D + ++ + + KLK EN++L+ LRN+
Sbjct: 117 DALNTKQEHLD-IKKRLEKSDETVCKLKEENENLQDMLRNV 156
>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 313
Score = 27.5 bits (58), Expect = 2.4
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = -1
Query: 350 KNFKQVSVLKVLHKTNVTTLSDSDEN--RSSKENP-LRFLTKVHNTFGEIFKREMSLVND 180
K K+ +LK H + T SD+D N S +EN L+ LT + + K+ V+D
Sbjct: 245 KGVKEKKILKTYHSQDKDTASDNDNNTGSSDEENDNLKELTPGKKEYLKSIKKYFQDVDD 304
>SPAC869.05c |||sulfate transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 840
Score = 27.5 bits (58), Expect = 2.4
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 506 PWKYALYNKSRSGFEMDDLSPLPKPFDDSVEDGNSVNNLESEMV 375
PW K + E++DL PL + + D ++VNNL++ V
Sbjct: 632 PWNVPRQRKKKENSEIEDLRPLLQAI---IFDFSAVNNLDTTAV 672
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 27.5 bits (58), Expect = 2.4
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Frame = -1
Query: 488 YNKSRSGFEMDDLS-PL---PKPFDDSVEDGNSVNNLESEMVITMKNCCNK 348
++ S S F LS P+ PK D +++ V L E + +NCCN+
Sbjct: 653 FDNSNSIFSESSLSSPIIEEPKTLIDCLKNFTHVEELSGENMFACENCCNQ 703
Score = 25.8 bits (54), Expect = 7.3
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = -1
Query: 446 PLPKPFDDSVEDGNSVNNL-ESEMVITMK 363
P PFDD N +NNL SE+V MK
Sbjct: 10 PSTNPFDDPSSIKNGLNNLTSSELVNQMK 38
>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 489
Score = 27.5 bits (58), Expect = 2.4
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -1
Query: 695 RLDLVDVACEANDFLKDVEPLTFDKEHIDNVHQKCDSHLNEIQKLKAENDSLKIELRNIY 516
+L + + + D L E T DK +ID V D+++NE K E D + +Y
Sbjct: 431 QLIMTSIFGKETDRLSTKEHFTDDKSYIDGVMPSTDTYMNE--KTSDELDKKSLPSDQVY 488
>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 803
Score = 27.1 bits (57), Expect = 3.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -1
Query: 590 DSHLNEIQKLKAENDSLKIELRNIYETHPWKYALYNKSR 474
D H N + D + +E RN TH +Y LY KS+
Sbjct: 731 DEHQNVLWYTVPPLDPIPLENRNGSLTHSVEYVLYKKSK 769
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 27.1 bits (57), Expect = 3.2
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -1
Query: 446 PLPKPFDDSVEDGNSVNNLESEMVITMKNCCNKNFKQ 336
PLPKPF + + + + S+ + TMK ++F++
Sbjct: 96 PLPKPFHERLAEARNQERKRSDKLKTMKKNRKQSFQR 132
>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 661
Score = 27.1 bits (57), Expect = 3.2
Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 10/200 (5%)
Frame = -1
Query: 719 KLNKSTSVRLDLVDVACEANDFLKDVEPLTFDKEHIDNVH-QKCDSHLNEIQKL----KA 555
K N++ ++ ++ ++ + + +V + D E I ++ ++ + LNE+ ++ K
Sbjct: 106 KKNEAKNMYKEIERLSVILGESVDEVNFVNGDFEDISDIKLEQLSAKLNELHQIYRLRKE 165
Query: 554 ENDSLKIELRNIYETHPWKYALYNKSRSGFEMDDLSPLPKPFDDSVEDGNSVNNLESEMV 375
+N +K EL+ + ++ K ++ S + L + S+E S E+V
Sbjct: 166 KNIEIKEELKKLQDSLSIKLSMPADDLSKNGIKHLIIYKEKLRFSLESRKS---RVDEIV 222
Query: 374 ITMKNCCNKNFKQVSVLKVLHKTNVTTLSDSDENRSSKENPLRFLTKVHNTFGEIFKREM 195
MKN C KN S L + TL EN S + F+ K + + KR +
Sbjct: 223 NEMKNMCGKN--PTSELPTNYSDKTLTLW---ENELSSMRKVYFV-KYKTEYEFLQKRYL 276
Query: 194 SL-----VNDKNTLVKSDFQ 150
SL V+ K L S F+
Sbjct: 277 SLARIMFVSKKEMLFTSQFK 296
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 26.6 bits (56), Expect = 4.2
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -1
Query: 650 KDVEPLTFDKEHIDNVHQKCDSHLNEIQKLKAENDSLKIELR-NIY-ETHPWKYALYNKS 477
KDVE L I+N+ + D+ + E ++A +L+ EL N+Y +P K + + +
Sbjct: 781 KDVEALKSLSGQIENLSHEFDAIIKERAHIEARKTALEYELNTNLYLRRNPLKAEIGSDN 840
Query: 476 R 474
R
Sbjct: 841 R 841
>SPBC119.07 |ppk19||serine/threonine protein kinase
Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1706
Score = 26.2 bits (55), Expect = 5.5
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 503 WKYALYN--KSRSGFEMDDLSPLPKPFDDSVEDGNSVNNLESEM 378
W LYN + + GFE + P P +ED +S+ E+ +
Sbjct: 383 WYLRLYNTMQEKKGFEDKEQGSTPAPSPSVIEDISSIETDENHL 426
>SPBC21C3.07c |||actin binding methyltransferase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 281
Score = 26.2 bits (55), Expect = 5.5
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Frame = -1
Query: 710 KSTSVRLDLVDVACEANDFLKDVEPLTFDKEHIDNVHQKCDSHLNEIQKLKAENDSLKIE 531
K++SVR + L E F++ D+V D HL +K E +
Sbjct: 12 KTSSVREATFSINESFGGRLLTEEEDVFEQNAWDHVEWD-DEHLALAKKCIEEQKLYPVT 70
Query: 530 LRNIYETHPWKY--ALYNKSRSGFEMD 456
++ Y THP +Y Y K+ F M+
Sbjct: 71 EKDAYMTHPERYWDQFYGKNEGKFFMN 97
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 5.5
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -1
Query: 620 EHIDNVHQKCDSHLNEIQKLKAENDSLKIELRNI 519
+ ++ + K + LNEI L+ EN+ L +++ +I
Sbjct: 506 KELETLRMKNSNDLNEIHDLREENEGLTLKIDSI 539
>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 844
Score = 26.2 bits (55), Expect = 5.5
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 5/66 (7%)
Frame = -1
Query: 560 KAENDSLKIE-LRNIYETHPWKYALYNKSRS---GFEMDDLS-PLPKPFDDSVEDGNSVN 396
++++ S+ +E L +YE + + N + S G E + S P K FD D +SVN
Sbjct: 352 QSQSSSIFVEHLNQLYEANASIHRPVNPAFSTNFGLEASNTSTPEKKKFDSQKPDDDSVN 411
Query: 395 NLESEM 378
+ S++
Sbjct: 412 EISSDL 417
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = -1
Query: 635 LTFDKEHIDNVHQKCDSHLNEIQKLKAENDSLKIELRN 522
+ F ++ + + + + + N I L+ EN+SLK L N
Sbjct: 72 INFLEQQLQSSNNQAEESRNLISVLRNENESLKTNLEN 109
>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.4 bits (53), Expect = 9.7
Identities = 18/71 (25%), Positives = 26/71 (36%)
Frame = +2
Query: 260 LYLNDFHLNRLKL*HSFCVILLKLTPV*NSYCNNFSSLSPFLIPNCLLNFHPRHCHRKAL 439
L ++ H+ L H KL N S S +L + F+ H H K
Sbjct: 383 LLISCAHITYLLDCHGIIQFYQKLVETKNKAEGKGSGQSFWLFTSKPFAFYLEHLHNKIQ 442
Query: 440 AAVIDHPFQNH 472
++HP NH
Sbjct: 443 GLSLNHPKMNH 453
>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
3|||Manual
Length = 542
Score = 25.4 bits (53), Expect = 9.7
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = -1
Query: 812 NYERKKYISSGQLNRECNKKSSTVGRRKTRRKLNKSTSVRLDLVDVACEANDFLKDVEPL 633
NY+ K + +L R + + ++K LNK R +LVDV A + + PL
Sbjct: 15 NYKGKGTFQADELRRRRETQQIEIRKQKREENLNK----RRNLVDVQEPAEETI----PL 66
Query: 632 TFDKEH 615
DKE+
Sbjct: 67 EQDKEN 72
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 9.7
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = -1
Query: 581 LNEIQKLK--AENDSLKIELRNIYETHPWKYALYNKSRSGFEMDDLSP 444
LNE Q LK +E +I + N+++ + +Y + F+ + LSP
Sbjct: 2959 LNEFQPLKFDSEESVTEIFMNNVFQNLCVVFYVYTSADVDFQTNSLSP 3006
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,354
Number of Sequences: 5004
Number of extensions: 63142
Number of successful extensions: 276
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 276
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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