Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e10
(812 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0880 + 6903535-6903932,6904931-6905022,6905601-6905680,690... 34 0.12
01_05_0199 - 19174971-19175105,19176302-19176628,19176813-191769... 33 0.20
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887 31 1.1
02_05_0701 + 31022485-31022648,31023569-31023611,31023712-310237... 31 1.1
10_01_0057 + 797732-797793,797819-797914,798816-799012,799730-80... 29 4.4
07_03_1335 + 25867375-25867504,25867786-25867835 29 4.4
09_04_0706 + 19627024-19627380,19629945-19629976,19630657-196307... 29 5.8
09_02_0524 - 10207711-10208154,10208237-10208338,10208439-102085... 29 5.8
02_04_0160 - 20427774-20428217,20428301-20428402,20428503-204285... 29 5.8
01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386 28 7.7
>01_01_0880 +
6903535-6903932,6904931-6905022,6905601-6905680,
6905885-6905926,6906001-6906128,6906530-6906710,
6906801-6906979,6907469-6907717,6907950-6908193
Length = 530
Score = 34.3 bits (75), Expect = 0.12
Identities = 18/77 (23%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = -1
Query: 797 KYISSGQLNRECNKKSSTVGRRKTRRKLNKSTSVRLDLVDVACEANDFLKDVEPLTFDKE 618
+++ S + + NK ++ +R+ R+KL+ +++A ND ++ P FDK
Sbjct: 197 QFVPSEKQVKAANKLLKSLPQRRRRKKLDGVPVFSAQNLNIAVATNDGIRWYTPYFFDKN 256
Query: 617 HIDNV-HQKCDSHLNEI 570
+DN+ D H + +
Sbjct: 257 LLDNILEASMDQHFHSM 273
>01_05_0199 -
19174971-19175105,19176302-19176628,19176813-19176915,
19178852-19178916,19179941-19180048,19180213-19180305,
19180395-19180442,19180801-19180899,19180980-19181096,
19181186-19181239,19181312-19181404,19181776-19181881,
19182050-19182084,19182173-19182259,19182385-19182462,
19182528-19182596,19182682-19182780,19183644-19183685,
19184498-19184570,19184654-19184982,19185070-19185127,
19185217-19185269,19186075-19186144,19186276-19186337,
19186452-19186540,19186906-19187011,19187110-19187178,
19187295-19187330
Length = 900
Score = 33.5 bits (73), Expect = 0.20
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = -1
Query: 416 EDGNSVNNLESEMVITMKNCCNKNFKQV-SVLKVLHKTNVTTLSDSDENRSSKENPLRFL 240
++G S LE + KNCCN N K+ + V K NVT + E+++S+E P+ +
Sbjct: 306 QNGASAEELEGGQLY--KNCCNTNPKEAKKTMAVPGKINVTPV----EDKTSEEEPVTYA 359
Query: 239 TKV 231
K+
Sbjct: 360 NKL 362
>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
Length = 1205
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/94 (19%), Positives = 46/94 (48%)
Frame = -1
Query: 581 LNEIQKLKAENDSLKIELRNIYETHPWKYALYNKSRSGFEMDDLSPLPKPFDDSVEDGNS 402
++E+++ + + D K++L + T+ + + R +DD S + + +DD
Sbjct: 155 MSELEETRRQQDKAKMDLVGLINTNDKELRVIGVWRKNGLLDDKSIIRRAYDDL-----K 209
Query: 401 VNNLESEMVITMKNCCNKNFKQVSVLKVLHKTNV 300
+ E I +K+ CN+ + S+ + L++ ++
Sbjct: 210 MRKFECYAWIRLKSLCNQTWLLQSISRQLYENSL 243
>02_05_0701 +
31022485-31022648,31023569-31023611,31023712-31023777,
31024007-31024062,31024091-31024190,31024290-31024472,
31024953-31025001,31025089-31025169,31025209-31025268,
31025394-31025514,31025612-31025693,31025783-31025868,
31026011-31026111,31026246-31026387,31026488-31026638,
31026710-31026937
Length = 570
Score = 31.1 bits (67), Expect = 1.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -1
Query: 497 YALYNKSRSGFEMDDLSPLPKPFDDSVEDGNSVNNLESEMV 375
+A N F D+L PL K F DS+ + ++NN+ ++V
Sbjct: 58 HAYDNYMTYAFPHDELKPLTKSFTDSLSELGNLNNVNDDIV 98
>10_01_0057 +
797732-797793,797819-797914,798816-799012,799730-800892
Length = 505
Score = 29.1 bits (62), Expect = 4.4
Identities = 34/142 (23%), Positives = 64/142 (45%), Gaps = 9/142 (6%)
Frame = -1
Query: 743 VGRRKTRRKLNKSTSVRLDLVDVACEAND----FLKDV--EPLTFDKEHIDNVHQKCDSH 582
+ RR+T K+ S+ ++ + +AN F KD+ E E I + +C
Sbjct: 369 ISRRQTI--YGKNRSLIIEFQEAYDQANSGRLLFDKDIAIEEDVLILEEIGRLAMEC--- 423
Query: 581 LNEIQKLKAENDSLKIELRNIYETHPWKYALYNKSRSGF-EMDDLSPLPKPFDDSVEDGN 405
LNE + + + L + + K YN SR F E + + LPK FDD+ +
Sbjct: 424 LNEKIDERPDMKEVVARLMMLRRSRKLKQENYNISRQQFFEENSIDELPKSFDDNSSSSS 483
Query: 404 S--VNNLESEMVITMKNCCNKN 345
+ ++NL ++ +T ++ ++
Sbjct: 484 AELLSNLATKNSLTYRSTTGRD 505
>07_03_1335 + 25867375-25867504,25867786-25867835
Length = 59
Score = 29.1 bits (62), Expect = 4.4
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -1
Query: 524 NIYETHPWKYALYNKSRSGFEMDDLSPLPKPFDDSVEDGNSVNNLESEMVITMKNC 357
+I ET W A + + G + + P P+P +D + NL+ E+V K C
Sbjct: 2 SIAETGDWAAADFGED--GVPVAGVDPDPEPEEDGAGAATLMQNLDGELVTPQKVC 55
>09_04_0706 +
19627024-19627380,19629945-19629976,19630657-19630751,
19632116-19632281,19632881-19632938,19633014-19633061,
19633274-19633464,19633580-19633702,19635174-19635289,
19635841-19635924,19636009-19636259,19636438-19636647
Length = 576
Score = 28.7 bits (61), Expect = 5.8
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = -1
Query: 731 KTRRKLNKSTSVRLDLVDVACEANDFLKDVEPLTFDKEHIDNVHQKCDSHLNEIQKLKAE 552
K RR +S + +D + V+C F +V F E I+++ ++ LNE K K +
Sbjct: 247 KIRRDKFRSANETVDHLFVSCPLARFACNVIASAFGLEKINSIQHLLEAWLNEFDKKKKQ 306
>09_02_0524 -
10207711-10208154,10208237-10208338,10208439-10208531,
10208612-10208683,10208730-10208798,10208928-10209175,
10209256-10209370
Length = 380
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 623 KEHIDNVHQKCDSHLNEIQKLKAENDSLKIELRN 522
++ + HQ+ + L E+QKL EN LK EL++
Sbjct: 295 QQQANEAHQQAAALLEEVQKLTVENLQLKGELQS 328
>02_04_0160 -
20427774-20428217,20428301-20428402,20428503-20428595,
20428675-20428860,20428966-20429213,20429292-20429412,
20430674-20430718,20431086-20431138,20431152-20431173
Length = 437
Score = 28.7 bits (61), Expect = 5.8
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -1
Query: 623 KEHIDNVHQKCDSHLNEIQKLKAENDSLKIELRN 522
++ + HQ+ + L E+QKL EN LK EL++
Sbjct: 352 QQQANEAHQQAAALLEEVQKLTVENLQLKGELQS 385
>01_07_0010 + 40429613-40429677,40429702-40430015,40432150-40434386
Length = 871
Score = 28.3 bits (60), Expect = 7.7
Identities = 21/74 (28%), Positives = 32/74 (43%)
Frame = -1
Query: 767 ECNKKSSTVGRRKTRRKLNKSTSVRLDLVDVACEANDFLKDVEPLTFDKEHIDNVHQKCD 588
ECN+ + + RK N++ D+A A F + L E IDN+ D
Sbjct: 129 ECNRDDAIRSKEIAERKFNEN--------DIA-GAKRFALKAKTLFDSLEGIDNMISALD 179
Query: 587 SHLNEIQKLKAEND 546
H+ K++ END
Sbjct: 180 IHIRAQTKIEGEND 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,252,907
Number of Sequences: 37544
Number of extensions: 346515
Number of successful extensions: 1040
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1039
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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