Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e08
(290 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ... 29 0.18
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 27 0.74
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 0.97
SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|... 26 0.97
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 1.7
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 3.0
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy... 24 3.9
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ... 24 5.2
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 23 6.9
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 23 6.9
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ... 23 9.1
SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces pombe... 23 9.1
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 23 9.1
SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 23 9.1
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 23 9.1
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 23 9.1
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 23 9.1
>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 550
Score = 28.7 bits (61), Expect = 0.18
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +2
Query: 74 LQAICFSNSPLYFIKSDLMISASRSFPDRDSHVSLTNLASAIRAYWASSLQFSTLGRS*F 253
L++I S P KS ++S ++ D SH+ +L ++RA + S L R
Sbjct: 459 LKSIILSQLPAAVFKSPDIVSVKKTLEDARSHLLKDDLDGSVRALLSLSQWPRALSRDWI 518
Query: 254 LAC 262
AC
Sbjct: 519 NAC 521
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 26.6 bits (56), Expect = 0.74
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = -3
Query: 219 DEAQYALMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRC 40
+EA EAK +RE ++L GK E R+DL + + A L +
Sbjct: 702 EEALRFSKLEAKNLREVIDNLKGKHETLEAQRNDLHSSLSDAKNTNAILSSELTKSSEDV 761
Query: 39 ARVRAHMPT 13
R+ A++ T
Sbjct: 762 KRLTANVET 770
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 0.97
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = -3
Query: 204 ALMAEAKFVRETCES-LSGKLREAEIIRSDLMKYRGELEK 88
AL+ +AK ET +S L+GKL E I L KYR L +
Sbjct: 62 ALLKDAKKQCETLKSALNGKLPEVNIESHMLSKYRKYLNE 101
>SPBC25H2.09 |||DUF1690 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 162
Score = 26.2 bits (55), Expect = 0.97
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Frame = -3
Query: 165 ESLSGKLREAEIIRSDLMKYRGE-LEKQIAC 76
+ L KL+E E IRSDL+K E +K + C
Sbjct: 110 KELKIKLKEVESIRSDLLKCMSEHPDKSLIC 140
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.4 bits (53), Expect = 1.7
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 141 EAEIIRSDLMKYRGELEKQIACKRKSL 61
+A++I SDL Y E + AC+ SL
Sbjct: 479 QAQLISSDLDMYNEETDTPAACRTSSL 505
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 24.6 bits (51), Expect = 3.0
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 59 FKLFLLQAI---CFSNSPLYFIKSDLMISASRSFPDRDSHVSLTNLASAIRAYWA 214
F +F+ A C N F+K + +SA + S VS L S I + WA
Sbjct: 139 FDIFMKHATKHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELVSQIASIWA 193
>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1142
Score = 24.2 bits (50), Expect = 3.9
Identities = 15/58 (25%), Positives = 29/58 (50%)
Frame = -3
Query: 228 NCRDEAQYALMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNI 55
N DE+++ L +E F++ SLS E+++ + +R + + CK + L I
Sbjct: 1077 NIHDESKHYLKSEKNFLQSVYSSLS----ESQVEDYQMELFREKQIFSVLCKDRELYI 1130
>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2344
Score = 23.8 bits (49), Expect = 5.2
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 62 KLFLLQAICFSNSPLYFIKSDLMISASR 145
+LFLLQA F F+ +L SA++
Sbjct: 1334 ELFLLQAFAFETVGSIFVSMELYTSATQ 1361
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 23.4 bits (48), Expect = 6.9
Identities = 15/55 (27%), Positives = 25/55 (45%)
Frame = -3
Query: 252 NYDRPNVENCRDEAQYALMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELEK 88
NYDR E + L+ + + RE E K+RE + +S + ++EK
Sbjct: 1097 NYDRQECEYLAEIVFKTLVEKEREWRENSEEWKEKMREYKKWQSTANQRAKQMEK 1151
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 23.4 bits (48), Expect = 6.9
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 54 QYSNFSFYKRSAFPIHPCTS 113
QYS Y+R F I PC S
Sbjct: 529 QYSGEQRYERCGFHITPCNS 548
>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 625
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 54 QYSNFSFYKRSAFPIHPC 107
+YS +S+Y P HPC
Sbjct: 509 EYSKYSWYLWRYPPFHPC 526
>SPAC8C9.19 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 94
Score = 23.0 bits (47), Expect = 9.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +2
Query: 44 LSRSIFKLFLLQAICFSNSPLYF 112
LS S F+ LLQ++CF + F
Sbjct: 60 LSMSYFECRLLQSVCFRQCQVEF 82
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 23.0 bits (47), Expect = 9.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 66 FSFYKRSAFPIHPCTSSN 119
FS+ K +AFP+ P ++ N
Sbjct: 7 FSYGKENAFPVTPISNRN 24
>SPCC417.03 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 100
Score = 23.0 bits (47), Expect = 9.1
Identities = 13/38 (34%), Positives = 16/38 (42%)
Frame = -3
Query: 240 PNVENCRDEAQYALMAEAKFVRETCESLSGKLREAEII 127
PN +DEA + L F TC S L E+I
Sbjct: 54 PNKRKRKDEAPFRLCIYTLFHAHTCFSCGLSLSLMEVI 91
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 23.0 bits (47), Expect = 9.1
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 5/59 (8%)
Frame = -3
Query: 240 PNVENCRDEAQYALMAEAKFVRETCESLSGKL-----REAEIIRSDLMKYRGELEKQIA 79
PNV + +AL AKFV + ESLS + A+ I+ +L+ + E+ Q A
Sbjct: 255 PNVTTF-ETVIFALCRRAKFVHQKIESLSKRTIYAHPSIAKEIQPELLDLQSEMPLQTA 312
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/45 (24%), Positives = 20/45 (44%)
Frame = -3
Query: 288 RNKLVMTRLHARNYDRPNVENCRDEAQYALMAEAKFVRETCESLS 154
R++ + +H N+D ++ EAQ L + T + LS
Sbjct: 410 RDESTVASIHRHNFDSDSINRLYAEAQLELKQRDGVLSSTKQQLS 454
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 23.0 bits (47), Expect = 9.1
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -3
Query: 96 LEKQIACKRKSLNIDLDRCARVRAHMP 16
+E IA R + +DL +CARV ++P
Sbjct: 104 VENVIAHLRGTKKLDLFQCARVDPNVP 130
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,216,944
Number of Sequences: 5004
Number of extensions: 22504
Number of successful extensions: 67
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 69775820
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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