Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e08
         (290 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodi...    26   0.25 
X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   1.8  
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    23   1.8  
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    22   5.4  
AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin s...    21   9.4  

>AM422833-1|CAM12801.1| 2139|Anopheles gambiae voltage-gated sodium
           channel alpha subunitprotein.
          Length = 2139

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = -3

Query: 183 FVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLD 46
           F RE+ +++  ++ + E  + +L + R E E     K+K   I  D
Sbjct: 19  FTRESLQAIEARIADEEAKQRELERKRAEGESDFGRKKKKKEIRYD 64



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 19   HVSSNSGAPV*INIQTFPFTSDLLFQFT 102
            HV   SG     N +TF  +  LLFQ +
Sbjct: 1776 HVKDKSGLDDVYNFKTFGQSMILLFQMS 1803


>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 112 HQIRSNDLGLSQFPR*RLTCFSYKLSF 192
           H + ++ + LS  P  RL   +YK+SF
Sbjct: 313 HDVSTHSMTLSWAPPIRLNPINYKISF 339


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
 Frame = -3

Query: 234 VENCRDEAQYALMAEAKFVRET-CESLSGKLREAEIIRSDLMKYRGELE 91
           V   R      L+ E K   +T CES SGK+++A I  +  +K  G++E
Sbjct: 302 VVRIRSTKNGGLLFELKKSDQTECESFSGKIQQA-IGEAGNVKSLGQME 349


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = +2

Query: 71  LLQAICFSNSPLYFIKSDLMISASRSFPDRDSHVSLTNLASAIRAY 208
           LL++  FSNS  Y+I     I+   + PD    + L    +  R Y
Sbjct: 124 LLESAGFSNSNPYYIVKQGKINQMATAPD-SHRLKLLREVAGTRVY 168


>AF492464-1|AAM11657.1|  803|Anopheles gambiae beta nu integrin
           subunit AgBnu protein.
          Length = 803

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -2

Query: 220 RRGPICSDG*S*VC 179
           R GPICSD    +C
Sbjct: 530 RTGPICSDRGECIC 543


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 301,125
Number of Sequences: 2352
Number of extensions: 5441
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 17819379
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)