Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e08
(290 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical pr... 44 2e-05
AL021572-2|CAA16518.1| 415|Caenorhabditis elegans Hypothetical ... 29 0.42
U41107-11|AAC71161.1| 454|Caenorhabditis elegans Hypothetical p... 29 0.73
U41107-10|AAN39669.1| 416|Caenorhabditis elegans Hypothetical p... 29 0.73
U41107-9|AAK73877.1| 471|Caenorhabditis elegans Hypothetical pr... 29 0.73
U41107-8|AAN39670.1| 468|Caenorhabditis elegans Hypothetical pr... 29 0.73
AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical ... 28 1.3
Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical pr... 27 3.0
AC006834-10|AAF40005.1| 745|Caenorhabditis elegans Hypothetical... 27 3.0
Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 3.9
Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 3.9
Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 3.9
Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical pr... 26 3.9
Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical pr... 26 3.9
Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical pr... 26 3.9
U40941-1|AAA81707.3| 306|Caenorhabditis elegans Syntaxin protei... 26 5.2
Z83318-7|CAL63994.1| 204|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z80220-6|CAB02305.1| 282|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z73103-4|CAA97426.1| 585|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z68303-6|CAD89754.1| 708|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z68303-5|CAA92639.2| 706|Caenorhabditis elegans Hypothetical pr... 25 6.8
Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical pr... 25 6.8
U97000-11|AAC47993.1| 321|Caenorhabditis elegans Serpentine rec... 25 6.8
AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine re... 25 6.8
AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical ... 25 6.8
Z81111-6|CAB03269.1| 332|Caenorhabditis elegans Hypothetical pr... 25 9.1
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 25 9.1
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 25 9.1
AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical ... 25 9.1
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 25 9.1
>U53337-2|AAA96184.1| 639|Caenorhabditis elegans Hypothetical
protein R02E12.4 protein.
Length = 639
Score = 43.6 bits (98), Expect = 2e-05
Identities = 26/89 (29%), Positives = 48/89 (53%)
Frame = -3
Query: 282 KLVMTRLHARNYDRPNVENCRDEAQYALMAEAKFVRETCESLSGKLREAEIIRSDLMKYR 103
++ ++R + R RP +E C D+AQ+AL E ++ T SL +L +A+ R L R
Sbjct: 535 QVALSRQNQRGL-RPGIELCNDKAQHALHQELMMLKGTFLSLENQLDKAKESRKKLDNDR 593
Query: 102 GELEKQIACKRKSLNIDLDRCARVRAHMP 16
+L++++ +L ID + ++R P
Sbjct: 594 DKLQRKLDICDHNLTIDNEILRQIRTSYP 622
>AL021572-2|CAA16518.1| 415|Caenorhabditis elegans Hypothetical
protein W06H3.2 protein.
Length = 415
Score = 29.5 bits (63), Expect = 0.42
Identities = 14/62 (22%), Positives = 31/62 (50%)
Frame = -3
Query: 279 LVMTRLHARNYDRPNVENCRDEAQYALMAEAKFVRETCESLSGKLREAEIIRSDLMKYRG 100
L++ R H +YDR N ++ + + E + R E ++ + E E++ ++K+
Sbjct: 289 LLLERTHYDSYDRKNSKSHEPLTDWGEIIEKEIERTKFELITKDMIETELLTQGMLKWLA 348
Query: 99 EL 94
+L
Sbjct: 349 DL 350
>U41107-11|AAC71161.1| 454|Caenorhabditis elegans Hypothetical
protein F55C12.1a protein.
Length = 454
Score = 28.7 bits (61), Expect = 0.73
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 192 EAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLD 46
E K +R E KL EA+++ + + R +LE+Q ++ D+D
Sbjct: 158 ETKRIRNELEKTENKLEEAQLLVEGMEEERIQLERQFRKFKEEAQQDID 206
>U41107-10|AAN39669.1| 416|Caenorhabditis elegans Hypothetical
protein F55C12.1c protein.
Length = 416
Score = 28.7 bits (61), Expect = 0.73
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 192 EAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLD 46
E K +R E KL EA+++ + + R +LE+Q ++ D+D
Sbjct: 120 ETKRIRNELEKTENKLEEAQLLVEGMEEERIQLERQFRKFKEEAQQDID 168
>U41107-9|AAK73877.1| 471|Caenorhabditis elegans Hypothetical
protein F55C12.1b protein.
Length = 471
Score = 28.7 bits (61), Expect = 0.73
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 192 EAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLD 46
E K +R E KL EA+++ + + R +LE+Q ++ D+D
Sbjct: 175 ETKRIRNELEKTENKLEEAQLLVEGMEEERIQLERQFRKFKEEAQQDID 223
>U41107-8|AAN39670.1| 468|Caenorhabditis elegans Hypothetical
protein F55C12.1d protein.
Length = 468
Score = 28.7 bits (61), Expect = 0.73
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 192 EAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLD 46
E K +R E KL EA+++ + + R +LE+Q ++ D+D
Sbjct: 172 ETKRIRNELEKTENKLEEAQLLVEGMEEERIQLERQFRKFKEEAQQDID 220
>AL132853-9|CAB60444.4| 1467|Caenorhabditis elegans Hypothetical
protein Y80D3A.2 protein.
Length = 1467
Score = 27.9 bits (59), Expect = 1.3
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 234 VENCRDEAQYALMAEAKFVRETCESLSGKLREAEIIR 124
+ N RD +Y L+ EAK + TC + LR E+++
Sbjct: 1019 LRNGRDRTEYLLVKEAKIIAMTCTHAA--LRRNELVK 1053
>Z69385-4|CAA93427.2| 1326|Caenorhabditis elegans Hypothetical
protein ZK593.5 protein.
Length = 1326
Score = 26.6 bits (56), Expect = 3.0
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = -3
Query: 165 ESLSGKLREAEIIRSDLMKYRGELEKQIACKR 70
+ +S +LR +E +RS L++ ELEKQI +R
Sbjct: 326 DRVSFELRSSEEVRSRLIQKITELEKQIGDER 357
>AC006834-10|AAF40005.1| 745|Caenorhabditis elegans Hypothetical
protein ZK973.1 protein.
Length = 745
Score = 26.6 bits (56), Expect = 3.0
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = -3
Query: 222 RDEAQYALMAEAKFVRETCESLSGKL-REAEIIRSDLMKYRGELEK 88
RDE + A +++ C +S KL REAE R DL K RG +EK
Sbjct: 182 RDEEVRKVSANIDILKKECR-VSAKLSREAEKNRKDLEK-RGIIEK 225
>Z82089-5|CAD91717.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 147 LREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVRAH 22
LREAE++RS + +G + ++ SL D+ R AR+ +
Sbjct: 4143 LREAELVRSTQSEAQGNI-STVSYIPSSLTYDVPRPARIEGY 4183
>Z82089-4|CAB54513.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 147 LREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVRAH 22
LREAE++RS + +G + ++ SL D+ R AR+ +
Sbjct: 4132 LREAELVRSTQSEAQGNI-STVSYIPSSLTYDVPRPARIEGY 4172
>Z82089-2|CAB05003.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 147 LREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVRAH 22
LREAE++RS + +G + ++ SL D+ R AR+ +
Sbjct: 4132 LREAELVRSTQSEAQGNI-STVSYIPSSLTYDVPRPARIEGY 4172
>Z81499-7|CAD91628.1| 4541|Caenorhabditis elegans Hypothetical protein
ZK270.2e protein.
Length = 4541
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 147 LREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVRAH 22
LREAE++RS + +G + ++ SL D+ R AR+ +
Sbjct: 4143 LREAELVRSTQSEAQGNI-STVSYIPSSLTYDVPRPARIEGY 4183
>Z81499-6|CAB54224.2| 4648|Caenorhabditis elegans Hypothetical protein
ZK270.2d protein.
Length = 4648
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 147 LREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVRAH 22
LREAE++RS + +G + ++ SL D+ R AR+ +
Sbjct: 4132 LREAELVRSTQSEAQGNI-STVSYIPSSLTYDVPRPARIEGY 4172
>Z81499-4|CAB04090.2| 4530|Caenorhabditis elegans Hypothetical protein
ZK270.2a protein.
Length = 4530
Score = 26.2 bits (55), Expect = 3.9
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 147 LREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVRAH 22
LREAE++RS + +G + ++ SL D+ R AR+ +
Sbjct: 4132 LREAELVRSTQSEAQGNI-STVSYIPSSLTYDVPRPARIEGY 4172
>U40941-1|AAA81707.3| 306|Caenorhabditis elegans Syntaxin protein 1
protein.
Length = 306
Score = 25.8 bits (54), Expect = 5.2
Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Frame = -3
Query: 288 RNKLVMTRLHARNYDRPNVENCRDEAQYALMAEAKF--VRETCESLSGKLREAEIIRSDL 115
+ K + +HA NYD P E+Q + +A F E C ++ G L+ E +
Sbjct: 10 QEKATVNTIHAYNYD-PPARKYDVESQPLINQDADFEMFLERCSNIRGGLKSLEEDYDAV 68
Query: 114 MKYRGEL 94
++ G L
Sbjct: 69 VQLHGAL 75
>Z83318-7|CAL63994.1| 204|Caenorhabditis elegans Hypothetical
protein F55B11.7 protein.
Length = 204
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 88 LFQFTPVLHQIRSNDLGLSQF 150
L+ F PV+H +N LG+ F
Sbjct: 44 LYNFNPVIHDTEANVLGVRMF 64
>Z80220-6|CAB02305.1| 282|Caenorhabditis elegans Hypothetical
protein T08G11.2 protein.
Length = 282
Score = 25.4 bits (53), Expect = 6.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -3
Query: 276 VMTRLHAR--NYDRPNVENCRDEAQYALMAEAKFVRETCESLSGKLREAEI 130
V+ +H R +Y + N + RD+ QY + K + L+GKL + +I
Sbjct: 26 VVCCVHGRRCSYGKGNQDGKRDDNQYVNLPFLKNQDQIASKLTGKLNKLKI 76
>Z73103-4|CAA97426.1| 585|Caenorhabditis elegans Hypothetical
protein C08F8.5 protein.
Length = 585
Score = 25.4 bits (53), Expect = 6.8
Identities = 12/51 (23%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Frame = +2
Query: 56 IFKLFLLQAICFSNSPLYFIKSDLMISASRSF-----PDRDSHVSLTNLAS 193
+ +L ++CF++ L+F+ + +++A F P R +SL++++S
Sbjct: 226 VIRLLNANSVCFTSYVLHFLHNTSIMAAVSPFRLLQLPQRAQRISLSHMSS 276
>Z68303-6|CAD89754.1| 708|Caenorhabditis elegans Hypothetical
protein ZK809.5b protein.
Length = 708
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -3
Query: 288 RNKLVMTRLHARNYDRPNVENCRDEAQYAL---MAEAKFVRETCESLSGKLREAEIIRSD 118
+ + V R ++ N E CRDE Q + M E + RE E S L+ + RSD
Sbjct: 175 KQRTVENRAIELTLNKENFEKCRDEWQRKMELEMEELRLERERIEVAS--LKSTDKRRSD 232
Query: 117 L 115
+
Sbjct: 233 M 233
>Z68303-5|CAA92639.2| 706|Caenorhabditis elegans Hypothetical
protein ZK809.5a protein.
Length = 706
Score = 25.4 bits (53), Expect = 6.8
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Frame = -3
Query: 288 RNKLVMTRLHARNYDRPNVENCRDEAQYAL---MAEAKFVRETCESLSGKLREAEIIRSD 118
+ + V R ++ N E CRDE Q + M E + RE E S L+ + RSD
Sbjct: 173 KQRTVENRAIELTLNKENFEKCRDEWQRKMELEMEELRLERERIEVAS--LKSTDKRRSD 230
Query: 117 L 115
+
Sbjct: 231 M 231
>Z54238-7|CAJ90498.1| 1861|Caenorhabditis elegans Hypothetical protein
T28C6.9 protein.
Length = 1861
Score = 25.4 bits (53), Expect = 6.8
Identities = 20/76 (26%), Positives = 30/76 (39%)
Frame = -3
Query: 246 DRPNVENCRDEAQYALMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRK 67
D P+ E L E ++ E CE L ++RE E + + E E A K
Sbjct: 910 DAPDDVMMTKERVEQLEGEIEWKEEECEGLKRRIRELEKALEAVAERADETE---AAKLT 966
Query: 66 SLNIDLDRCARVRAHM 19
+ D+D R A +
Sbjct: 967 TRQADVDSLFRTNAEL 982
>U97000-11|AAC47993.1| 321|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 33 protein.
Length = 321
Score = 25.4 bits (53), Expect = 6.8
Identities = 8/24 (33%), Positives = 18/24 (75%)
Frame = +1
Query: 160 RLTCFSYKLSFSHQSILGLVSAVF 231
+LTC +YK+S + +++L + ++F
Sbjct: 202 KLTCMTYKISIAERNLLFMSGSLF 225
>AF068717-3|AAC17762.2| 361|Caenorhabditis elegans Serpentine
receptor, class w protein142 protein.
Length = 361
Score = 25.4 bits (53), Expect = 6.8
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 111 KYRGELEKQIACKRKSLNI 55
+YR E++K I C RKS+++
Sbjct: 335 RYRAEVKKVIFCGRKSIHV 353
>AF016448-6|AAB65951.1| 217|Caenorhabditis elegans Hypothetical
protein F41E6.9 protein.
Length = 217
Score = 25.4 bits (53), Expect = 6.8
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = -3
Query: 258 ARNYDRPNVENCRDEAQYALMAEAKFVRETCESLSGKLREAEIIRSDLMKYR 103
+R YD P+++ EA+ A++ + + E+ + + A + SD K R
Sbjct: 149 SRQYDTPDIDEADLEAELAMLGDELDIGESDTNYLDEALAAPTVPSDKPKTR 200
>Z81111-6|CAB03269.1| 332|Caenorhabditis elegans Hypothetical
protein T01G5.7 protein.
Length = 332
Score = 25.0 bits (52), Expect = 9.1
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = -3
Query: 270 TRLHARNYDRPNVENCRDEAQYALMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELE 91
T+ H + +E R + +M + K +R T E L E + +D +YR ELE
Sbjct: 87 TQQHKLVAELSKMEIERSNSAIEIMKKDKQLRTTEEQLIMMANLGEELGNDAKRYRSELE 146
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -3
Query: 201 LMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVR 28
++ EAK +T + L+G ++ S + K G+L ++S+N+D+ + A+++
Sbjct: 1799 VLEEAKLQLQTSDELNGM----SLLDSIISKNFGDLHTIYTDTQQSVNLDVQKSAKLK 1852
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -3
Query: 201 LMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVR 28
++ EAK +T + L+G ++ S + K G+L ++S+N+D+ + A+++
Sbjct: 1816 VLEEAKLQLQTSDELNGM----SLLDSIISKNFGDLHTIYTDTQQSVNLDVQKSAKLK 1869
>AF047655-7|AAC04404.1| 561|Caenorhabditis elegans Hypothetical
protein C17B7.10 protein.
Length = 561
Score = 25.0 bits (52), Expect = 9.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = -3
Query: 150 KLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVRAHMP 16
K E ++IR+ + EL IAC R+S + L R + H P
Sbjct: 94 KCSEFKLIRTGV----AELFLSIACDRRSSHSPLSRIEELEVHQP 134
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 25.0 bits (52), Expect = 9.1
Identities = 14/58 (24%), Positives = 32/58 (55%)
Frame = -3
Query: 201 LMAEAKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDRCARVR 28
++ EAK +T + L+G ++ S + K G+L ++S+N+D+ + A+++
Sbjct: 1799 VLEEAKLQLQTSDELNGM----SLLDSIISKNFGDLHTIYTDTQQSVNLDVQKSAKLK 1852
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,741,486
Number of Sequences: 27780
Number of extensions: 123926
Number of successful extensions: 351
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 351
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 280685548
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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