Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e08
         (290 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-lik...    21   3.1  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    20   5.4  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   5.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   7.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    19   9.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   9.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    19   9.4  

>AF134818-1|AAD40234.1|  130|Apis mellifera lambda crystallin-like
           protein protein.
          Length = 130

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 7/37 (18%), Positives = 21/37 (56%)
 Frame = -3

Query: 189 AKFVRETCESLSGKLREAEIIRSDLMKYRGELEKQIA 79
           A+ +++ CE+    + +  +    + K+ GE+ ++I+
Sbjct: 60  AEGMKKYCETYKNSIYDVSMTFGPVPKFEGEMAEKIS 96


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = -3

Query: 162 SLSGKLREAEIIRSDLMKYRGELEKQIACK 73
           +L+ K     + R+  +KY   +   IAC+
Sbjct: 88  ALNHKFSSVTLYRNKTVKYSARMHAIIACQ 117


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 156 SGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDR 43
           SGKL   E  R  L KY      ++A +  S+ ID+ R
Sbjct: 554 SGKLERTEEQRIALRKYHAPRLAKLALESTSM-IDVVR 590


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -3

Query: 156 SGKLREAEIIRSDLMKYRGELEKQIACKRKSLNIDLDR 43
           SGKL   E  R  L KY      ++A +  S+ ID+ R
Sbjct: 592 SGKLERTEEQRIALRKYHAPRLAKLALESTSM-IDVVR 628


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 150 KLREAEIIRSDLMKYRGELEKQ 85
           K ++ E+ R    K+RG +EK+
Sbjct: 854 KQKKMELARHAADKWRGAIEKR 875


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -1

Query: 197 WLKLSL*EKHVSLYLGNCE 141
           W+   L EKH++  + +C+
Sbjct: 116 WVPHELKEKHLTQRINSCD 134


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 174 LLQT*LQPSEHIGPRLCSFRHWDGHSS 254
           L+ T +Q     G   CS R+  GHS+
Sbjct: 573 LVITSVQKKGDAGVYTCSARNKQGHSA 599


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +3

Query: 174 LLQT*LQPSEHIGPRLCSFRHWDGHSS 254
           L+ T +Q     G   CS R+  GHS+
Sbjct: 573 LVITSVQKKGDAGVYTCSARNKQGHSA 599


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,927
Number of Sequences: 438
Number of extensions: 1378
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)