Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e06
         (733 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    25   1.8  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            25   3.2  
AJ821850-1|CAH25390.1|  426|Anopheles gambiae alpha-2,6-sialyltr...    25   3.2  
AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding pr...    24   5.6  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = -3

Query: 614 KIQHSIYLS*ATTY*KIIMQPNKLKILMIGPSESGKTQI 498
           K+   I++   +TY  +++ P +   +++GP+ +GK+ I
Sbjct: 8   KVCALIFIILFSTYDSVVLYPEEYLNIILGPNGTGKSAI 46


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 641  SYNYVEKLISSFFLEIPIVYCICLSFIPSVT 733
            S+NYVE ++ +            +SFIPS T
Sbjct: 1440 SWNYVETIVDTTHFPTETKLVFDISFIPSTT 1470


>AJ821850-1|CAH25390.1|  426|Anopheles gambiae
           alpha-2,6-sialyltransferase protein.
          Length = 426

 Score = 24.6 bits (51), Expect = 3.2
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -3

Query: 206 KQCVVFYNCVDDQYDVGHLNLSSTFSRISQVAVNLRTERER 84
           K CVV YN    Q   G++ +      I+ ++ N+   RER
Sbjct: 12  KACVVIYNTXQIQISKGNMRVLIELLIIAILSFNVVQARER 52


>AY146759-1|AAO12074.1|  356|Anopheles gambiae odorant-binding
           protein AgamOBP45 protein.
          Length = 356

 Score = 23.8 bits (49), Expect = 5.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 176 DDQYDVGHLNLSSTFSRISQ 117
           D   DV HL LS +FSR  Q
Sbjct: 27  DASLDVPHLTLSKSFSRALQ 46


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 667,470
Number of Sequences: 2352
Number of extensions: 12502
Number of successful extensions: 16
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 74844540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)