Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmte13e06
(733 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical pr... 62 5e-10
AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family pr... 44 8e-05
Z22181-6|CAA80185.1| 178|Caenorhabditis elegans Hypothetical pr... 43 2e-04
AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylat... 43 3e-04
AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylat... 43 3e-04
AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family pr... 43 3e-04
U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like prot... 42 3e-04
Z99281-8|CAB16514.1| 185|Caenorhabditis elegans Hypothetical pr... 42 5e-04
AB185209-1|BAD30093.1| 185|Caenorhabditis elegans novel small G... 42 5e-04
Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical pr... 41 0.001
U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein. 41 0.001
U32305-19|AAK18851.1| 181|Caenorhabditis elegans Adp-ribosylati... 41 0.001
AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family pr... 41 0.001
AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein. 41 0.001
Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z49912-5|CAA90136.1| 312|Caenorhabditis elegans Hypothetical pr... 40 0.001
U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily ass... 40 0.001
AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical ... 39 0.003
AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical... 38 0.007
AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family pr... 37 0.017
Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical pr... 36 0.039
AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family pr... 35 0.068
U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical pr... 34 0.090
AL117204-5|CAB55153.1| 175|Caenorhabditis elegans Hypothetical ... 34 0.12
U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated p... 33 0.21
AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cel... 33 0.21
AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein. 33 0.21
Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical pr... 33 0.28
Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical pr... 33 0.28
U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like prot... 33 0.28
Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical pr... 31 1.1
AC087079-5|ABC48240.1| 367|Caenorhabditis elegans Hypothetical ... 30 1.5
AC087079-4|ABC48239.1| 370|Caenorhabditis elegans Hypothetical ... 30 1.5
AL009246-4|CAA15838.2| 368|Caenorhabditis elegans Hypothetical ... 29 3.4
AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical ... 29 4.5
AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical ... 28 5.9
>Z82285-6|CAB05299.1| 252|Caenorhabditis elegans Hypothetical
protein T28F3.6 protein.
Length = 252
Score = 61.7 bits (143), Expect = 5e-10
Identities = 50/158 (31%), Positives = 79/158 (50%), Gaps = 32/158 (20%)
Frame = -3
Query: 560 MQPNK--LKILMIGPSESGKTQIANFLSNSINI-------DEAGNP------------KP 444
MQ +K KIL++GP ++GKT + FL++ + +++G +P
Sbjct: 22 MQEDKKVAKILVLGPPKAGKTTLCTFLADFMEDGDTLKKGEDSGERERKFEFEFTSVYRP 81
Query: 443 TQGLRIVEFE---------QSNINYTGRNVD--IELWDCSGDHRFESCWPALRFGVKGVI 297
T+G+RI EFE Q+ + T R D I+LWD SGD ++E CWPA++ +GVI
Sbjct: 82 TKGVRIQEFETHEFFTEQEQNELGGTRRLEDSEIQLWDVSGDKKYEDCWPAIKENAEGVI 141
Query: 296 LVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVFYN 183
LV N E +L+ + FV + + +V N
Sbjct: 142 LVV--NPEEHKGSDLQQWFYEFVEKENIDLSCVMVILN 177
>AF003139-1|AAB54158.1| 211|Caenorhabditis elegans Rab family
protein 11.1 protein.
Length = 211
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQI-ANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
K+++IG S GK+ + + F N N++ K T G VEF +I+ G+ V ++W
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFNLES----KSTIG---VEFATRSISVEGKTVKAQIW 65
Query: 365 DCSGDHRFESCWPALRFGVKGVILV 291
D +G R+ + A G G +LV
Sbjct: 66 DTAGQERYRAITSAYYRGAVGALLV 90
>Z22181-6|CAA80185.1| 178|Caenorhabditis elegans Hypothetical
protein ZK632.8 protein.
Length = 178
Score = 43.2 bits (97), Expect = 2e-04
Identities = 32/104 (30%), Positives = 47/104 (45%)
Frame = -3
Query: 548 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIEL 369
K KI+++G +GKT I L N + D+ KPT G + E ++Y RN+D +
Sbjct: 17 KYKIIVVGLDNAGKTTI---LYNYVTKDQV-ETKPTIGSNVEE-----VSY--RNLDFVI 65
Query: 368 WDCSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELELLYN 237
WD G W VI+V S+ + P E L+N
Sbjct: 66 WDIGGQESLRKSWSTYYVQTDVVIVVIDSSDTTRIPIMKEQLHN 109
>AY519855-1|AAR89636.1| 180|Caenorhabditis elegans ADP-ribosylation
factor related(20.5 kD) (arf-3) protein.
Length = 180
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/125 (26%), Positives = 53/125 (42%)
Frame = -3
Query: 548 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIEL 369
+++ILM+G +GKT I + + E PT G + E NI++T +
Sbjct: 17 QVRILMVGLDAAGKTTIL----YKLKLGEIVTTIPTIGFNVETVEYKNISFT-------V 65
Query: 368 WDCSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVF 189
WD G + W +G+I V SN E E L+ +++ +L +VF
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERIEESREELHK-MLNEDELRDATLLVF 124
Query: 188 YNCVD 174
N D
Sbjct: 125 ANKQD 129
>AF045644-6|AAC02598.1| 180|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 3 protein.
Length = 180
Score = 42.7 bits (96), Expect = 3e-04
Identities = 33/125 (26%), Positives = 53/125 (42%)
Frame = -3
Query: 548 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIEL 369
+++ILM+G +GKT I + + E PT G + E NI++T +
Sbjct: 17 QVRILMVGLDAAGKTTIL----YKLKLGEIVTTIPTIGFNVETVEYKNISFT-------V 65
Query: 368 WDCSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVF 189
WD G + W +G+I V SN E E L+ +++ +L +VF
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDKERIEESREELHK-MLNEDELRDATLLVF 124
Query: 188 YNCVD 174
N D
Sbjct: 125 ANKQD 129
>AC024875-5|AAM44401.1| 203|Caenorhabditis elegans Rab family
protein 18, isoform b protein.
Length = 203
Score = 42.7 bits (96), Expect = 3e-04
Identities = 26/85 (30%), Positives = 44/85 (51%)
Frame = -3
Query: 545 LKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
LKIL+IG S GK+ + +D+ +P+ + V+F +++ G V + +W
Sbjct: 12 LKILIIGESGVGKSSLMLRF-----VDDVFDPEQAATIG-VDFRVTSMAIDGNRVKLAIW 65
Query: 365 DCSGDHRFESCWPALRFGVKGVILV 291
D +G RF + P+ G +GVI V
Sbjct: 66 DTAGQERFRTLTPSYYRGAQGVICV 90
>U68258-1|AAB16973.1| 127|Caenorhabditis elegans rab11-like
protein.
Length = 127
Score = 42.3 bits (95), Expect = 3e-04
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQI-ANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
K+++IG S GK+ + + F N +++ K T G VEF +I+ G+ V ++W
Sbjct: 13 KVVLIGDSGVGKSNLLSRFTRNEFHLES----KSTIG---VEFATRSISVEGKTVKAQIW 65
Query: 365 DCSGDHRFESCWPALRFGVKGVILV 291
D +G R+ + A G G +LV
Sbjct: 66 DTAGQERYRAITSAYYRGAVGALLV 90
>Z99281-8|CAB16514.1| 185|Caenorhabditis elegans Hypothetical
protein Y57G11C.13 protein.
Length = 185
Score = 41.9 bits (94), Expect = 5e-04
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Frame = -3
Query: 548 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIEL 369
++++ ++G SGKT N +++ ++ PT G F I T NV I+L
Sbjct: 20 EMELTLVGLQNSGKTTFVNVIASGQFTEDM---IPTVG-----FNMRKI--TKGNVTIKL 69
Query: 368 WDCSGDHRFESCWPALRFGVKGVI-LVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVV 192
WD G RF S W GV ++ +V +++ ++ EL+ + +P+L +V
Sbjct: 70 WDIGGQPRFRSMWERYCRGVNAIVFMVDAADEEKLEASRNELM--QLLDKPQLDAIPVLV 127
Query: 191 FYN------CVDDQYDVGHLNLSSTFSR 126
N +D++ + +NLSS +R
Sbjct: 128 LGNKKDLPGALDERQLIERMNLSSIQNR 155
>AB185209-1|BAD30093.1| 185|Caenorhabditis elegans novel small G
protein indispensablefor equal chromosome segregation
protein.
Length = 185
Score = 41.9 bits (94), Expect = 5e-04
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 7/148 (4%)
Frame = -3
Query: 548 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIEL 369
++++ ++G SGKT N +++ ++ PT G F I T NV I+L
Sbjct: 20 EMELTLVGLQNSGKTTFVNVIASGQFTEDM---IPTVG-----FNMRKI--TKGNVTIKL 69
Query: 368 WDCSGDHRFESCWPALRFGVKGVI-LVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVV 192
WD G RF S W GV ++ +V +++ ++ EL+ + +P+L +V
Sbjct: 70 WDIGGQPRFRSMWERYCRGVNAIVFMVDAADEEKLEASRNELM--QLLDKPQLDAIPVLV 127
Query: 191 FYN------CVDDQYDVGHLNLSSTFSR 126
N +D++ + +NLSS +R
Sbjct: 128 LGNKKDLPGALDERQLIERMNLSSIQNR 155
>Z93391-6|CAJ85753.1| 198|Caenorhabditis elegans Hypothetical
protein W04G5.2 protein.
Length = 198
Score = 40.7 bits (91), Expect = 0.001
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQI-ANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
KI++IG GK+ + + F N N+ KPT G VEF I+ G+ V +++W
Sbjct: 10 KIVLIGNPGVGKSNLLSRFTRNEFNLKS----KPTIG---VEFATKIISVEGKAVKVQIW 62
Query: 365 DCSGDHRFESCWPALRFGVKGVILV 291
D +G RF + G G +LV
Sbjct: 63 DTAGMERFRCGASSYYRGALGALLV 87
>U68256-1|AAB16971.1| 123|Caenorhabditis elegans rab8-like protein.
Length = 123
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQIA-NFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
K+L+IG S GKT + F +S N T G ++F+ I G+ + +++W
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSDDSFNNSFIS----TIG---IDFKIRTIELDGKKIKLQIW 62
Query: 365 DCSGDHRFESCWPALRFGVKGVILV 291
D +G RF + A G G+ILV
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIILV 87
>U32305-19|AAK18851.1| 181|Caenorhabditis elegans Adp-ribosylation
factor relatedprotein 1.2 protein.
Length = 181
Score = 40.7 bits (91), Expect = 0.001
Identities = 33/125 (26%), Positives = 52/125 (41%)
Frame = -3
Query: 548 KLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIEL 369
+++ILM+G +GKT I + + E PT G + E NI++T +
Sbjct: 17 EMRILMVGLDAAGKTTIL----YKLKLGEIVTTIPTIGFNVETVEYKNISFT-------V 65
Query: 368 WDCSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVF 189
WD G + W +G+I V SN E E L +++ +L +VF
Sbjct: 66 WDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMR-MLAEDELRDAVLLVF 124
Query: 188 YNCVD 174
N D
Sbjct: 125 ANKQD 129
>AF106592-3|AAK21367.2| 211|Caenorhabditis elegans Rab family
protein 8 protein.
Length = 211
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQIA-NFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
K+L+IG S GKT + F +S N T G ++F+ I G+ + +++W
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSDDSFNNSFIS----TIG---IDFKIRTIELDGKKIKLQIW 62
Query: 365 DCSGDHRFESCWPALRFGVKGVILV 291
D +G RF + A G G+ILV
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIILV 87
>AB112929-1|BAD07034.1| 211|Caenorhabditis elegans Rab8 protein.
Length = 211
Score = 40.7 bits (91), Expect = 0.001
Identities = 27/85 (31%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQIA-NFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
K+L+IG S GKT + F +S N T G ++F+ I G+ + +++W
Sbjct: 10 KLLLIGDSGVGKTCVLFRFSDDSFNNSFIS----TIG---IDFKIRTIELDGKKIKLQIW 62
Query: 365 DCSGDHRFESCWPALRFGVKGVILV 291
D +G RF + A G G+ILV
Sbjct: 63 DTAGQERFRTITTAYYRGAMGIILV 87
>Z66516-6|CAA91357.1| 209|Caenorhabditis elegans Hypothetical
protein W03C9.3 protein.
Length = 209
Score = 40.3 bits (90), Expect = 0.001
Identities = 25/84 (29%), Positives = 41/84 (48%)
Frame = -3
Query: 545 LKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
LK++++G S GKT + N +N + K T G +F ++N R V +++W
Sbjct: 10 LKVIILGDSGVGKTSLMN---QYVNRRFSNQYKATIG---ADFLTRDVNIDDRTVTLQIW 63
Query: 365 DCSGDHRFESCWPALRFGVKGVIL 294
D +G RF+S A G +L
Sbjct: 64 DTAGQERFQSLGVAFYRGADCCVL 87
>Z49912-5|CAA90136.1| 312|Caenorhabditis elegans Hypothetical
protein T24F1.1 protein.
Length = 312
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/70 (30%), Positives = 37/70 (52%)
Frame = -3
Query: 551 NKLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIE 372
+K K+L++G S SGKT + + + + + PT +E E +++ + G N+ +
Sbjct: 3 SKRKVLLMGKSGSGKTSMRSIIFANYIARDCSRLGPT-----IEVEHAHVKFLG-NMVLH 56
Query: 371 LWDCSGDHRF 342
LWDC G F
Sbjct: 57 LWDCGGQESF 66
>U64600-3|AAK39204.1| 656|Caenorhabditis elegans Temporarily
assigned gene nameprotein 312 protein.
Length = 656
Score = 40.3 bits (90), Expect = 0.001
Identities = 27/84 (32%), Positives = 39/84 (46%)
Frame = -3
Query: 542 KILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELWD 363
+I+M G + GK+ +F+ I T G V+F +N GRNV ++LWD
Sbjct: 463 RIVMCGDAAVGKS---SFVMRVIRRQFTNQLPSTLG---VDFHVKTVNVDGRNVALQLWD 516
Query: 362 CSGDHRFESCWPALRFGVKGVILV 291
+G RF S + G ILV
Sbjct: 517 TAGQERFRSLCKSYFRRADGAILV 540
>AL132865-6|CAB60605.1| 210|Caenorhabditis elegans Hypothetical
protein Y62E10A.9 protein.
Length = 210
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = -3
Query: 542 KILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELWD 363
KI+++G GKT + N +D G T G V+F + G+ V +++WD
Sbjct: 12 KIVLVGDMGVGKTCVVQRFRNGTFVDRQGT---TIG---VDFTMKTLVVDGKRVKLQIWD 65
Query: 362 CSGDHRFESCWPALRFGVKGVIL 294
G RF + + G++L
Sbjct: 66 TGGQERFRTITQSYYRSANGIVL 88
>AL117202-19|CAB57899.1| 209|Caenorhabditis elegans Hypothetical
protein Y47D3A.25 protein.
Length = 209
Score = 37.9 bits (84), Expect = 0.007
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 1/92 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQIA-NFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
K+L+IG S GK+ + F N+ + N T G V+F+ ++ G+ V +++W
Sbjct: 12 KLLIIGDSGVGKSSLLLRFADNTFS----ENYITTIG---VDFKIRTMDINGQRVKLQIW 64
Query: 365 DCSGDHRFESCWPALRFGVKGVILVCSSNTSE 270
D +G RF + G GV++V E
Sbjct: 65 DTAGQERFRTITSTYYRGTHGVVVVYDVTNGE 96
>AC024875-6|AAK29988.3| 193|Caenorhabditis elegans Rab family
protein 18, isoform a protein.
Length = 193
Score = 36.7 bits (81), Expect = 0.017
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = -3
Query: 446 PTQGLRI-VEFEQSNINYTGRNVDIELWDCSGDHRFESCWPALRFGVKGVILV 291
P Q I V+F +++ G V + +WD +G RF + P+ G +GVI V
Sbjct: 11 PEQAATIGVDFRVTSMAIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICV 63
>Z66499-1|CAA91296.1| 207|Caenorhabditis elegans Hypothetical
protein T01B7.3 protein.
Length = 207
Score = 35.5 bits (78), Expect = 0.039
Identities = 20/87 (22%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -3
Query: 548 KLKILMIGPSESGKTQIA-NFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIE 372
K KI+++G GK+ + F+ N + + + F+ +N D+
Sbjct: 12 KFKIVLLGEGCVGKSSLVLRFVENKFSCKHLSTIQAS-------FQNKTVNVEDCQADLH 64
Query: 371 LWDCSGDHRFESCWPALRFGVKGVILV 291
+WD +G ++ + P G GV+LV
Sbjct: 65 IWDTAGQEKYHALGPIYYRGSNGVLLV 91
>AF101310-3|AAC69218.1| 205|Caenorhabditis elegans Rab family
protein 1 protein.
Length = 205
Score = 34.7 bits (76), Expect = 0.068
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = -3
Query: 425 VEFEQSNINYTGRNVDIELWDCSGDHRFESCWPALRFGVKGVILV 291
V+F+ I G+ + +++WD +G RF + + G G+I+V
Sbjct: 46 VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVV 90
>U40942-7|AAC47067.2| 218|Caenorhabditis elegans Hypothetical
protein K02E10.1 protein.
Length = 218
Score = 34.3 bits (75), Expect = 0.090
Identities = 28/99 (28%), Positives = 45/99 (45%), Gaps = 1/99 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQIA-NFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
KI+++G GK+ I F NS +D T G V+F+ I + +ELW
Sbjct: 8 KIVVVGDHNCGKSCILLRFAENSFRMDHIS----TLG---VDFKLKTIKLGRDKIRLELW 60
Query: 365 DCSGDHRFESCWPALRFGVKGVILVCSSNTSEVAPRELE 249
D +G R+ + + + GV+ V T+E + LE
Sbjct: 61 DTAGMERYRTIYNSYYHSAHGVMCVYDM-TNEKSFENLE 98
>AL117204-5|CAB55153.1| 175|Caenorhabditis elegans Hypothetical
protein Y116A8C.12 protein.
Length = 175
Score = 33.9 bits (74), Expect = 0.12
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 1/131 (0%)
Frame = -3
Query: 563 IMQPNKLKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRN 384
I +L+ILM+G +GKT I + + ++ PT G F + Y +N
Sbjct: 8 IFGKKELRILMLGLDAAGKTTIL----YKLKLGQSVTTIPTVG-----FNVETVTY--KN 56
Query: 383 VDIELWDCSGDHRFESCWPALRFGVKGVILVC-SSNTSEVAPRELELLYNYFVSQPKLST 207
+ +WD G + W G + +I V +++ V +EL + ++ ++
Sbjct: 57 IKFNVWDVGGQDKIRPLWRHYYTGTQALIFVMDAADRDRVDEARMEL--HRIINDREMKE 114
Query: 206 KQCVVFYNCVD 174
+VF N D
Sbjct: 115 AIILVFANKQD 125
>U97191-2|AAB52431.1| 214|Caenorhabditis elegans Uncoordinated
protein 108 protein.
Length = 214
Score = 33.1 bits (72), Expect = 0.21
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = -3
Query: 449 KPTQGLRI-VEFEQSNINYTGRNVDIELWDCSGDHRFESCWPALRFGVKGVILV 291
+P L I VEF + G+ + +++WD +G F S + G G +LV
Sbjct: 32 QPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLV 85
>AC024810-18|ABC71796.1| 787|Caenorhabditis elegans Abnormal cell
migration protein 30 protein.
Length = 787
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 293 VCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVFYNC-VDDQYDVGHLNLSSTFSRISQ 117
VCSS S + P ++ LL + KL + V ++C V D + L +FS+I
Sbjct: 659 VCSSIESHLDPFDVSLLSPLLAANVKLVYTRTQVLFSCLVADTLSSKEVQLPQSFSKIQD 718
Query: 116 VAVNL 102
V+V++
Sbjct: 719 VSVHI 723
>AB212859-1|BAE66674.1| 787|Caenorhabditis elegans COGC-1 protein.
Length = 787
Score = 33.1 bits (72), Expect = 0.21
Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
Frame = -3
Query: 293 VCSSNTSEVAPRELELLYNYFVSQPKLSTKQCVVFYNC-VDDQYDVGHLNLSSTFSRISQ 117
VCSS S + P ++ LL + KL + V ++C V D + L +FS+I
Sbjct: 659 VCSSIESHLDPFDVSLLSPLLAANVKLVYTRTQVLFSCLVADTLSSKEVQLPQSFSKIQD 718
Query: 116 VAVNL 102
V+V++
Sbjct: 719 VSVHI 723
>Z79601-4|CAB01884.1| 210|Caenorhabditis elegans Hypothetical
protein K09A9.2 protein.
Length = 210
Score = 32.7 bits (71), Expect = 0.28
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -3
Query: 425 VEFEQSNINYTGRNVDIELWDCSGDHRFESCWPALRFGVKGVILV 291
VEF I +G+ + +++WD +G RF + + G G ++V
Sbjct: 46 VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMV 90
>Z46241-6|CAA86319.1| 190|Caenorhabditis elegans Hypothetical
protein C38D4.8 protein.
Length = 190
Score = 32.7 bits (71), Expect = 0.28
Identities = 23/89 (25%), Positives = 39/89 (43%)
Frame = -3
Query: 545 LKILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELW 366
+ I+++G SGKT I N L + PT G + F N+++ +
Sbjct: 18 VNIVVVGLDNSGKTTILNQLKTPETRSQ--QIVPTVGHVVTNFSTQNLSF-------HAF 68
Query: 365 DCSGDHRFESCWPALRFGVKGVILVCSSN 279
D +G ++ S W + +GVI V S+
Sbjct: 69 DMAGQMKYRSTWESYFHSSQGVIFVLDSS 97
>U68260-1|AAB16975.1| 69|Caenorhabditis elegans rab19-like
protein.
Length = 69
Score = 32.7 bits (71), Expect = 0.28
Identities = 18/64 (28%), Positives = 31/64 (48%)
Frame = -3
Query: 542 KILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIELWD 363
KI+++G GKT + N +D G T G V+F + G+ V +++WD
Sbjct: 12 KIVLVGDMGVGKTCVVQRFRNGTFVDRQGT---TIG---VDFTMKTLVVDGKRVKLQIWD 65
Query: 362 CSGD 351
+G+
Sbjct: 66 TAGE 69
>Z47808-1|CAA87774.2| 229|Caenorhabditis elegans Hypothetical
protein D2013.1 protein.
Length = 229
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 1/92 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRIVEFEQSNINYT-GRNVDIELW 366
++++IG S GK+ + + + + E +P T G V+F I G V ++LW
Sbjct: 19 RLIVIGDSTVGKSSLLRYFTEG-KMAEISDP--TVG---VDFYARMIELRPGYRVKLQLW 72
Query: 365 DCSGDHRFESCWPALRFGVKGVILVCSSNTSE 270
D +G +F S + GV+ + + E
Sbjct: 73 DTAGQEKFRSITKSYYRNSVGVLAIYDTTNRE 104
>AC087079-5|ABC48240.1| 367|Caenorhabditis elegans Hypothetical
protein Y37E3.5b protein.
Length = 367
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/88 (23%), Positives = 32/88 (36%)
Frame = -3
Query: 446 PTQGLRIVEFEQSNINYTGRNVDIELWDCSGDHRFESCWPALRFGVKGVILVCSSNTSEV 267
P LR F + Y + ++D GD W V G+I V +T E
Sbjct: 49 PRDLLRTNGFSTVKMEYD-ETFHLTIYDVGGDKGIRGIWSNYYAEVHGIIYVIDYSTDET 107
Query: 266 APRELELLYNYFVSQPKLSTKQCVVFYN 183
+E L++ S P + K + N
Sbjct: 108 FTESIEALHS-LTSNPHVQKKPIFLLLN 134
>AC087079-4|ABC48239.1| 370|Caenorhabditis elegans Hypothetical
protein Y37E3.5a protein.
Length = 370
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/88 (23%), Positives = 32/88 (36%)
Frame = -3
Query: 446 PTQGLRIVEFEQSNINYTGRNVDIELWDCSGDHRFESCWPALRFGVKGVILVCSSNTSEV 267
P LR F + Y + ++D GD W V G+I V +T E
Sbjct: 49 PRDLLRTNGFSTVKMEYD-ETFHLTIYDVGGDKGIRGIWSNYYAEVHGIIYVIDYSTDET 107
Query: 266 APRELELLYNYFVSQPKLSTKQCVVFYN 183
+E L++ S P + K + N
Sbjct: 108 FTESIEALHS-LTSNPHVQKKPIFLLLN 134
>AL009246-4|CAA15838.2| 368|Caenorhabditis elegans Hypothetical
protein C47F8.5 protein.
Length = 368
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 692 LGFPKRNLK*VFLHNYTSKAKEYSEVKIQHS 600
LG P++NL+ V+ H+Y + E E+ HS
Sbjct: 305 LGIPRKNLEHVYRHDYDIQDNEGKEILAWHS 335
>AL032621-1|CAA21489.1| 216|Caenorhabditis elegans Hypothetical
protein Y45F3A.2 protein.
Length = 216
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/85 (22%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Frame = -3
Query: 542 KILMIGPSESGKTQIANFLSNSINIDEAGNPKPTQGLRI-VEFEQSNINYTGRNVDIELW 366
K++++G + GKT + + I P Q I V+F + + +++W
Sbjct: 9 KVVLVGNAGVGKTCLVRKFTQGIF-------PPGQSATIGVDFMIKTVKVGNDKIKLQIW 61
Query: 365 DCSGDHRFESCWPALRFGVKGVILV 291
D +G RF S + ++LV
Sbjct: 62 DTAGQERFRSITQSYYRSAHAIVLV 86
>AL031254-1|CAA20282.1| 395|Caenorhabditis elegans Hypothetical
protein 4R79.2 protein.
Length = 395
Score = 28.3 bits (60), Expect = 5.9
Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 4/95 (4%)
Frame = -3
Query: 563 IMQPNKL-KILMIGPSESGKTQIAN-FLSNSINIDEAGNPKPTQGLRI-VEFEQSNINYT 393
+ QP+++ K++ +G S GKT + F N KP I V+F +
Sbjct: 196 VTQPDRIFKVVFVGDSAVGKTCFLHRFCHNRF--------KPLFNATIGVDFTVKTMKIP 247
Query: 392 -GRNVDIELWDCSGDHRFESCWPALRFGVKGVILV 291
R + ++LWD +G RF S GV+L+
Sbjct: 248 PNRAIAMQLWDTAGQERFRSITKQYFRKADGVVLM 282
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,710,079
Number of Sequences: 27780
Number of extensions: 290875
Number of successful extensions: 820
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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