Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e06
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein ...    23   3.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   9.0  

>DQ855486-1|ABH88173.1|  104|Apis mellifera chemosensory protein 5
           protein.
          Length = 104

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 587 MKGRCYVVFSLHCILLLYSYNYVEKLISSFFLEIPIVYC 703
           +K R YV   LHCIL     + + K I     E+   +C
Sbjct: 27  LKDRPYVQKQLHCILDRGHCDVIGKKIKELLPEVLNNHC 65


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 488 LSNSINIDEAGNPKPTQGLRIVEFEQSNINYTGRNVDIE 372
           +SN IN  +         L+++E  +  +N+   N DIE
Sbjct: 278 ISNLINCSDILEEFERNRLQLLESFKRKVNFYPNNQDIE 316


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -3

Query: 236 YFVSQPKLSTKQCVVFYNCVDDQYDVGHLNLSSTFSRISQVAVNLRTE 93
           Y  + P    ++  V    ++    V   +LSS+  ++ Q  +NLRT+
Sbjct: 323 YIYNNPFSDVEERRVSKTAMNSNQIVSDNSLSSSEEKLKQDILNLRTD 370


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,636
Number of Sequences: 438
Number of extensions: 3573
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)