Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e04
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744...    25   8.4  
01_06_1788 - 39873900-39873986,39874009-39874137,39874180-398742...    25   8.4  
01_01_0354 + 2804640-2804703,2804911-2806451                           25   8.4  

>07_01_0890 -
           7437901-7439339,7439452-7439657,7439841-7440171,
           7440268-7440405,7440619-7440874,7440963-7441318,
           7441421-7441709
          Length = 1004

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 97  PMIVSQGVLSXSPLFXWLF 153
           P IV+ GVL  +  F WLF
Sbjct: 124 PYIVASGVLLTASFFEWLF 142


>01_06_1788 -
           39873900-39873986,39874009-39874137,39874180-39874246,
           39874874-39874909,39875146-39875292,39875772-39875899,
           39876349-39876435,39876523-39876633,39877433-39877600,
           39877665-39877749,39877826-39877942,39878051-39878127,
           39879981-39880077,39880175-39880377,39880519-39880645,
           39880687-39880754,39880855-39880908,39880990-39881108,
           39881651-39881729,39881803-39881865,39882113-39882232,
           39882718-39882774,39882872-39882988,39883122-39883172,
           39883262-39883360,39883438-39883583,39883740-39883887
          Length = 928

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 58  ARLYSRYSNTSQEEACCHK 2
           A  Y+R  N SQ   CCH+
Sbjct: 161 ANAYTRKGNLSQAAECCHQ 179


>01_01_0354 + 2804640-2804703,2804911-2806451
          Length = 534

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 10  NRLPPAMYYYI*NTTLXNSAMTPAPRTR 93
           ++L  A++YY    T+ +  MTP PRT+
Sbjct: 473 DKLDEALHYY---RTMESRGMTPEPRTK 497


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,214,904
Number of Sequences: 37544
Number of extensions: 63704
Number of successful extensions: 97
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)