Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e04
         (251 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT024208-1|ABC86270.1|  887|Drosophila melanogaster RE41602p pro...    29   1.1  
AE014297-4288|AAN14304.2|  983|Drosophila melanogaster CG33553-P...    29   1.1  
L35601-1|AAC37208.1| 1549|Drosophila melanogaster ankyrin protein.     26   6.0  
AE014135-20|AAN06551.1| 1549|Drosophila melanogaster CG1651-PD, ...    26   6.0  
AE014135-19|AAG22123.1| 1549|Drosophila melanogaster CG1651-PC, ...    26   6.0  
AE014135-18|AAF59369.2| 1549|Drosophila melanogaster CG1651-PB, ...    26   6.0  
AE014135-17|AAN06550.1| 1549|Drosophila melanogaster CG1651-PA, ...    26   6.0  

>BT024208-1|ABC86270.1|  887|Drosophila melanogaster RE41602p
           protein.
          Length = 887

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 203 CNYGKKNXISVFYTMPQNNXSNSGE 129
           C YG  N +S     P +N SNSG+
Sbjct: 25  CGYGNNNSVSSSNNNPSSNMSNSGQ 49


>AE014297-4288|AAN14304.2|  983|Drosophila melanogaster CG33553-PE,
           isoform E protein.
          Length = 983

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -1

Query: 203 CNYGKKNXISVFYTMPQNNXSNSGE 129
           C YG  N +S     P +N SNSG+
Sbjct: 25  CGYGNNNSVSSSNNNPSSNMSNSGQ 49


>L35601-1|AAC37208.1| 1549|Drosophila melanogaster ankyrin protein.
          Length = 1549

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 227 GFIKIYTKCNYGKKNXISVFYTMPQNNXS--NSGEXDKTP 114
           GF  ++  C YGK+N + +   + QN  S    G+ D TP
Sbjct: 563 GFTPLHLACKYGKQNVVQI---LLQNGASIDFQGKNDVTP 599


>AE014135-20|AAN06551.1| 1549|Drosophila melanogaster CG1651-PD,
           isoform D protein.
          Length = 1549

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 227 GFIKIYTKCNYGKKNXISVFYTMPQNNXS--NSGEXDKTP 114
           GF  ++  C YGK+N + +   + QN  S    G+ D TP
Sbjct: 563 GFTPLHLACKYGKQNVVQI---LLQNGASIDFQGKNDVTP 599


>AE014135-19|AAG22123.1| 1549|Drosophila melanogaster CG1651-PC,
           isoform C protein.
          Length = 1549

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 227 GFIKIYTKCNYGKKNXISVFYTMPQNNXS--NSGEXDKTP 114
           GF  ++  C YGK+N + +   + QN  S    G+ D TP
Sbjct: 563 GFTPLHLACKYGKQNVVQI---LLQNGASIDFQGKNDVTP 599


>AE014135-18|AAF59369.2| 1549|Drosophila melanogaster CG1651-PB,
           isoform B protein.
          Length = 1549

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 227 GFIKIYTKCNYGKKNXISVFYTMPQNNXS--NSGEXDKTP 114
           GF  ++  C YGK+N + +   + QN  S    G+ D TP
Sbjct: 563 GFTPLHLACKYGKQNVVQI---LLQNGASIDFQGKNDVTP 599


>AE014135-17|AAN06550.1| 1549|Drosophila melanogaster CG1651-PA,
           isoform A protein.
          Length = 1549

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 227 GFIKIYTKCNYGKKNXISVFYTMPQNNXS--NSGEXDKTP 114
           GF  ++  C YGK+N + +   + QN  S    G+ D TP
Sbjct: 563 GFTPLHLACKYGKQNVVQI---LLQNGASIDFQGKNDVTP 599


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,588,328
Number of Sequences: 53049
Number of extensions: 107364
Number of successful extensions: 241
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 24,988,368
effective HSP length: 63
effective length of database: 21,646,281
effective search space used: 432925620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)