Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e04
         (251 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81594-2|CAB04746.1|  416|Caenorhabditis elegans Hypothetical pr...    29   0.44 
AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical ...    29   0.44 
AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical ...    29   0.44 
AF016668-4|AAO12440.1|  222|Caenorhabditis elegans Hypothetical ...    26   4.1  
Z75548-2|CAA99910.1|  143|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z93387-5|CAB54299.3|  134|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z81594-2|CAB04746.1|  416|Caenorhabditis elegans Hypothetical
           protein T20F10.4 protein.
          Length = 416

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 227 GFIKIYTKCNYGKKNXISVFYTMPQNNXS 141
           GF++ Y K  YG+K+ +S+ Y  P+N  S
Sbjct: 168 GFVECYNKVIYGRKHNLSL-YRSPENKNS 195


>AL110478-4|CAB54346.1|  546|Caenorhabditis elegans Hypothetical
           protein Y26D4A.10 protein.
          Length = 546

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 227 GFIKIYTKCNYGKKNXISVFYTMPQNNXS 141
           GF++ Y K  YG+K+ +S+ Y  P+N  S
Sbjct: 168 GFVECYNKIIYGRKHNLSL-YRSPENKNS 195


>AC006757-2|AAF60543.1|  416|Caenorhabditis elegans Hypothetical
           protein Y40C7B.3 protein.
          Length = 416

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 227 GFIKIYTKCNYGKKNXISVFYTMPQNNXS 141
           GF++ Y K  YG+K+ +S+ Y  P+N  S
Sbjct: 168 GFVECYNKIIYGRKHNLSL-YRSPENKNS 195


>AF016668-4|AAO12440.1|  222|Caenorhabditis elegans Hypothetical
           protein F36H9.4 protein.
          Length = 222

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 1   FCDNRLPPAMYYYI*NTTLXNSAMTPAPRTR 93
           FC  R PP  +Y++    + N  + P+P+ R
Sbjct: 132 FCPPRHPPNEHYFLLVHKMGNFVLLPSPKFR 162


>Z75548-2|CAA99910.1|  143|Caenorhabditis elegans Hypothetical
           protein R90.2 protein.
          Length = 143

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 221 IKIYTKCNYGKKNXISVFYTMPQNNXSNSGEXDKT 117
           + IY KCNY       +  T+P N  S+     KT
Sbjct: 88  LNIYHKCNYNGLCYKKIGITIPDNYVSSGKTPSKT 122


>Z93387-5|CAB54299.3|  134|Caenorhabditis elegans Hypothetical
           protein T02E9.5 protein.
          Length = 134

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 52  TLXNSAMTPAPRTRPPMIVSQGVLSXSPLFXWLFC 156
           T   +  TPAP+        Q V   +PLF  L+C
Sbjct: 98  TTTTTTTTPAPQYESINAAYQAVTIIAPLFAALYC 132


>AL032644-4|CAA21665.1|  490|Caenorhabditis elegans Hypothetical
           protein Y51H1A.4 protein.
          Length = 490

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 49  TTLXNSAMTPAPRTRPPMIVSQGVLSXS 132
           + L ++  +PAPR RPP I    +L  S
Sbjct: 195 SALSSAIPSPAPRGRPPKIAKDQLLLSS 222


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,499,926
Number of Sequences: 27780
Number of extensions: 56247
Number of successful extensions: 149
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 12,740,198
effective HSP length: 63
effective length of database: 10,990,058
effective search space used: 219801160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)