Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e04
         (251 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   3.1  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   3.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    20   4.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           20   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   9.6  

>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.4 bits (43), Expect = 1.8
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = +3

Query: 174 GNXVLFSIVTFCIYF 218
           G  VLF I  FCI F
Sbjct: 204 GASVLFEIFPFCIVF 218


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 11/30 (36%), Positives = 13/30 (43%)
 Frame = +1

Query: 28  MYYYI*NTTLXNSAMTPAPRTRPPMIVSQG 117
           M Y + N  L +S   P P   PP   S G
Sbjct: 323 MEYCLVNIVLGDSDTPPKPAPPPPPPSSSG 352


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 20.6 bits (41), Expect = 3.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 212 YTKCNYGKKNXISVF 168
           YT+C   K N  S+F
Sbjct: 408 YTRCENPKTNFFSIF 422


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 140 NSGEXDKTPWLT 105
           NSG+    PW+T
Sbjct: 325 NSGDVQDVPWVT 336


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 4.2
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -1

Query: 140 NSGEXDKTPWLT 105
           NSG+    PW+T
Sbjct: 325 NSGDVQDVPWVT 336


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 9.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 46  NTTLXNSAMTPAPR 87
           NTT   SA TP P+
Sbjct: 679 NTTQNASATTPPPQ 692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,171
Number of Sequences: 438
Number of extensions: 1023
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4527252
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)