Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmte13e02
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.94 
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    28   1.2  
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.2  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    27   2.2  
SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   2.9  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    27   3.8  
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   3.8  
SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|ch...    27   3.8  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    27   3.8  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    26   5.0  
SPBC119.18 |||mitochondrial distribution and morphology protein ...    26   6.6  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.6  
SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit Cut9|...    25   8.7  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    25   8.7  

>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 430

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -2

Query: 245 ALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVE---DESKLDTEMKTKVPVKTYSNTR 75
           A+E  S +++E+  KIE        K  S DD+V+   + SKL  + K    +K  S   
Sbjct: 15  AIEYESGVDEESSLKIEKFRVLIFGKDNSQDDLVKSVFNLSKLSEKEKMPFGIKCESEEN 74

Query: 74  KNVKFEDNKIG 42
            N +   +K+G
Sbjct: 75  PNFESYHSKVG 85


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 560 SDIFAYYQFCLRSC-ILYRSVSP---CPVATPENAAS 658
           S I A++  CLRSC I+Y S++P   C +    N  S
Sbjct: 79  STIDAFFSMCLRSCTIIYFSMNPYMLCEILNARNVIS 115


>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 515

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 229 EAISSALPYNNFNTFSLTCNDLPKIV 306
           E+++SA  Y   N FSL C+ +P  +
Sbjct: 79  ESVTSASNYPKVNAFSLMCSGIPSFI 104


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 21/75 (28%), Positives = 37/75 (49%)
 Frame = -2

Query: 278 KENVLKLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVP 99
           +E + KLL      +++L   E   + EC+  +E  +K +   I E++SKL  E+K  V 
Sbjct: 252 QERLEKLLVSSNKTVSTLRQTENSLRAECKTLQEKLEKCA---INEEDSKLLEELKHNVA 308

Query: 98  VKTYSNTRKNVKFED 54
             + +   K+   ED
Sbjct: 309 NYSDAIVHKDKLIED 323


>SPAC27D7.09c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -2

Query: 590 SKIDNMQIYHCSHMKCDSSTASMCPSSFT 504
           ++I  +  ++CS   CD +T   CP+S+T
Sbjct: 324 NRIAEIGRFNCSSSGCDYATNVTCPNSYT 352


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1429

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 19/65 (29%), Positives = 28/65 (43%)
 Frame = -2

Query: 227 LLNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMKTKVPVKTYSNTRKNVKFEDNK 48
           +LN   GC        EL KK+S   ++  +SK       K   +T  + + N   E+NK
Sbjct: 626 ILNVNLGCVNNLTELTELTKKSSLKYVLYVDSKEVASKTIKFVDRTPISLQTNAYIENNK 685

Query: 47  IGSPK 33
             S K
Sbjct: 686 KSSIK 690


>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 463

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 590 SKIDNMQIYHCSHMKCDSSTASMCPSSFT 504
           ++I  +  ++CS   CD +T   CP S+T
Sbjct: 404 NRIAEIGRFNCSSSGCDYATNVTCPDSYT 432


>SPAC27D7.10c |||But2 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 383

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -2

Query: 590 SKIDNMQIYHCSHMKCDSSTASMCPSSFT 504
           ++I  +  ++CS   CD +T   CP S+T
Sbjct: 324 NRIAEIGRFNCSSSGCDYATNVTCPDSYT 352


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 558 AVIYLHIINFAYGRVFYIAAFLRVLSP 638
           +++YLH+I F Y   + ++  L V+SP
Sbjct: 193 SIVYLHVIWFLYYACWILSEGLNVISP 219


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 224 LNDEAGCKIECQNGKELAKKTSTDDIVEDESKLDTEMK 111
           LND+ G K    N +     T   D +ED S+ D ++K
Sbjct: 17  LNDKKGTKTSETNDRNSTNNTKERDELEDLSEEDLQLK 54


>SPBC119.18 |||mitochondrial distribution and morphology protein
           Mdm35 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 69

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +2

Query: 554 DCSDIFAYYQFCLRSCILYRSVSP 625
           DC ++FA Y+ CL   +  + + P
Sbjct: 37  DCDELFAEYKSCLLKALKTKKIDP 60


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 199 ILQPASSFNSEAISSALPYNNFN 267
           + QP S  NSE  SS  P N+FN
Sbjct: 255 VWQPRSQKNSEKGSSIYPQNSFN 277


>SPAC6F12.15c |cut9|dre1|anaphase-promoting complex subunit
           Cut9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -3

Query: 727 LHLYELHIAGLHSEGAENLFF 665
           L +Y LH+A LH  G +N  +
Sbjct: 339 LDVYPLHLASLHESGEKNKLY 359


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = -2

Query: 269 VLKLLYGKALEMASLLNDEAGCKIECQNGKELAKKTSTDDIV 144
           V  LLY   LE   +   E G K+ C+  K++       DIV
Sbjct: 127 VRSLLYHPQLEYDYVWRIEPGLKLVCEEKKDIFSTFKDSDIV 168


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,231
Number of Sequences: 5004
Number of extensions: 53121
Number of successful extensions: 180
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)